Variant report

Variant	rs16933287
Chromosome Location	chr8:68306564-68306565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10089351	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099172	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102487	0.84[AFR][1000 genomes]
rs10103112	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334628	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933285	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28380262	0.83[AFR][1000 genomes]
rs28537350	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706574	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28763309	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28844108	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55839780	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7013505	0.89[ASW][hapmap]
rs73691344	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691346	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691347	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7840501	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68283400-68314000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:68301000-68308000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:68304200-68306600	Enhancers	Thymus	Thymus
4	chr8:68304200-68307400	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:68304200-68307600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:68304600-68306600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:68304600-68307000	Enhancers	Primary T cells fromperipheralblood	blood
8	chr8:68304800-68307000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:68304800-68307000	Enhancers	Fetal Thymus	thymus
10	chr8:68305000-68306600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr8:68305200-68307800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr8:68305600-68307000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr8:68305600-68307000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:68305800-68306600	Enhancers	GM12878-XiMat	blood
15	chr8:68305800-68307200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:68305800-68308000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr8:68305800-68308000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr8:68305800-68308000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr8:68305800-68308000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr8:68306000-68308800	Enhancers	Primary T cells from cord blood	blood
21	chr8:68306200-68307000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
22	chr8:68306200-68307000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:68306200-68307200	Enhancers	Primary B cells from cord blood	blood
24	chr8:68306200-68307800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr8:68306200-68307800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr8:68306200-68308000	Enhancers	Monocytes-CD14+_RO01746	blood

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