Variant report

Variant	rs55839780
Chromosome Location	chr8:68322959-68322960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10089351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099172	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10102487	0.81[AFR][1000 genomes]
rs10103112	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334628	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933285	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16933287	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28380262	0.90[AFR][1000 genomes]
rs28537350	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706574	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28763309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28844108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73691347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7840501	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752263	chr8:68170946-68788493	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv1839724	chr8:68195817-68346693	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1024135	chr8:68235792-68629789	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv539642	chr8:68235792-68629789	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2752264	chr8:68244546-68647201	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:68309600-68327200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:68314200-68323000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:68320800-68327000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:68322600-68323400	Enhancers	Rectal Smooth Muscle	rectum
5	chr8:68322800-68323200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:68322800-68323200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr8:68322800-68323400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr8:68322800-68324000	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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