Variant report

Variant	rs10103899
Chromosome Location	chr8:130134084-130134085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10092914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10099444	0.90[AMR][1000 genomes]
rs10100800	0.90[AMR][1000 genomes]
rs10100827	0.90[AMR][1000 genomes]
rs10101042	0.90[AMR][1000 genomes]
rs10107885	0.90[AMR][1000 genomes]
rs10107975	0.90[AMR][1000 genomes]
rs10110386	1.00[AMR][1000 genomes]
rs10112361	0.90[AMR][1000 genomes]
rs10112789	0.90[AMR][1000 genomes]
rs12334787	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335205	0.90[AMR][1000 genomes]
rs12335209	0.90[AMR][1000 genomes]
rs12335212	0.90[AMR][1000 genomes]
rs12335286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28413993	0.90[AMR][1000 genomes]
rs28432327	0.90[AMR][1000 genomes]
rs28435899	0.90[AMR][1000 genomes]
rs28440123	0.90[AMR][1000 genomes]
rs28445111	0.89[AMR][1000 genomes]
rs28489771	0.90[AMR][1000 genomes]
rs28635661	0.90[AMR][1000 genomes]
rs28664242	0.90[AMR][1000 genomes]
rs28671612	0.90[AMR][1000 genomes]
rs28712759	0.90[AMR][1000 genomes]
rs6998743	0.90[AMR][1000 genomes]
rs7001023	0.90[AMR][1000 genomes]
rs7001343	0.90[AMR][1000 genomes]
rs7001923	0.90[AMR][1000 genomes]
rs7844110	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
2	chr8:130128600-130135200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr8:130131200-130136000	Genic enhancers	Dnd41	blood
4	chr8:130131800-130134600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:130131800-130134800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:130131800-130135000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:130132200-130134800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:130133400-130134200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:130133400-130134400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:130133400-130135000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr8:130133800-130136400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:130134000-130134800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:130134000-130135800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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