Variant report

Variant	rs6998743
Chromosome Location	chr8:130146557-130146558
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10092914	0.90[AMR][1000 genomes]
rs10099444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100800	1.00[AMR][1000 genomes]
rs10100827	1.00[AMR][1000 genomes]
rs10101042	1.00[AMR][1000 genomes]
rs10103899	0.90[AMR][1000 genomes]
rs10107885	1.00[AMR][1000 genomes]
rs10107975	1.00[AMR][1000 genomes]
rs10110386	0.90[AMR][1000 genomes]
rs10112361	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112789	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334787	0.90[AMR][1000 genomes]
rs12335205	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335209	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335212	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335286	0.90[AMR][1000 genomes]
rs28413993	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432327	1.00[AMR][1000 genomes]
rs28435899	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28440123	1.00[AMR][1000 genomes]
rs28489771	1.00[AMR][1000 genomes]
rs28635661	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28664242	1.00[AMR][1000 genomes]
rs28671612	1.00[AMR][1000 genomes]
rs28712759	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6984018	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7001023	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001343	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001923	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7844110	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2761241	chr8:130139946-130146557	Genic enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
2	chr8:130146000-130158800	Genic enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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