Variant report

Variant	rs7001023
Chromosome Location	chr8:130137977-130137978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130133021..130135254-chr8:130137855..130140230,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10092914	0.90[AMR][1000 genomes]
rs10099444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100800	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10100827	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10101042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10103899	0.90[AMR][1000 genomes]
rs10107885	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10107975	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110386	0.90[AMR][1000 genomes]
rs10112361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10112789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12334787	0.90[AMR][1000 genomes]
rs12335205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12335286	0.90[AMR][1000 genomes]
rs28413993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432327	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28435899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28440123	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489771	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28635661	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28664242	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28671612	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28712759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6984018	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6998743	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7844110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891443	chr8:130016499-130220746	Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130126400-130160600	Weak transcription	Fetal Thymus	thymus
2	chr8:130137400-130138000	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links