Variant report

Variant	rs10104237
Chromosome Location	chr8:52331031-52331032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10090385	1.00[AMR][1000 genomes]
rs10091000	1.00[AMR][1000 genomes]
rs10091540	1.00[AMR][1000 genomes]
rs10092414	1.00[AMR][1000 genomes]
rs10093816	1.00[AMR][1000 genomes]
rs10094022	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098035	1.00[AMR][1000 genomes]
rs10098585	1.00[AMR][1000 genomes]
rs10098829	1.00[AMR][1000 genomes]
rs10108607	1.00[AMR][1000 genomes]
rs13438832	1.00[AMR][1000 genomes]
rs13439874	1.00[AMR][1000 genomes]
rs16916174	1.00[AMR][1000 genomes]
rs16916198	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs16916220	1.00[AMR][1000 genomes]
rs16916238	1.00[AMR][1000 genomes]
rs16916388	1.00[AMR][1000 genomes]
rs16916400	1.00[AMR][1000 genomes]
rs16916413	1.00[AMR][1000 genomes]
rs16916579	1.00[AMR][1000 genomes]
rs16919814	0.81[AFR][1000 genomes]
rs2392904	1.00[AMR][1000 genomes]
rs28407367	1.00[AMR][1000 genomes]
rs28433608	1.00[AMR][1000 genomes]
rs28445664	1.00[AMR][1000 genomes]
rs28525054	1.00[AMR][1000 genomes]
rs28560412	1.00[AMR][1000 genomes]
rs28629961	1.00[AMR][1000 genomes]
rs28665895	1.00[AMR][1000 genomes]
rs28734103	1.00[AMR][1000 genomes]
rs28865671	1.00[AMR][1000 genomes]
rs4327854	1.00[AMR][1000 genomes]
rs4460364	1.00[AMR][1000 genomes]
rs9942813	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv1005621	chr8:52327474-52332853	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52316800-52342200	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr8:52321800-52335400	Weak transcription	Aorta	Aorta
3	chr8:52322200-52337400	Weak transcription	Left Ventricle	heart
4	chr8:52322200-52342800	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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