Variant report

Variant	rs16916174
Chromosome Location	chr8:52301735-52301736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10090385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091000	1.00[AMR][1000 genomes]
rs10091540	1.00[AMR][1000 genomes]
rs10092414	1.00[AMR][1000 genomes]
rs10093816	1.00[AMR][1000 genomes]
rs10094022	1.00[AMR][1000 genomes]
rs10098035	1.00[AMR][1000 genomes]
rs10098585	1.00[AMR][1000 genomes]
rs10098829	1.00[AMR][1000 genomes]
rs10104237	1.00[AMR][1000 genomes]
rs10108607	1.00[AMR][1000 genomes]
rs13438832	1.00[AMR][1000 genomes]
rs13439874	1.00[AMR][1000 genomes]
rs16916198	1.00[AMR][1000 genomes]
rs16916220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16916238	1.00[AMR][1000 genomes]
rs16916388	1.00[AMR][1000 genomes]
rs16916400	1.00[AMR][1000 genomes]
rs16916413	1.00[AMR][1000 genomes]
rs2392904	1.00[AMR][1000 genomes]
rs28407367	1.00[AMR][1000 genomes]
rs28433608	1.00[AMR][1000 genomes]
rs28445664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28525054	1.00[AMR][1000 genomes]
rs28560412	1.00[AMR][1000 genomes]
rs28629961	1.00[AMR][1000 genomes]
rs28665895	1.00[AMR][1000 genomes]
rs28734103	1.00[AMR][1000 genomes]
rs28865671	1.00[AMR][1000 genomes]
rs4327854	1.00[AMR][1000 genomes]
rs4460364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9942813	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv948338	chr8:52060314-52368754	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52296800-52301800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:52296800-52301800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:52301200-52302400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:52301400-52302800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:52301400-52302800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:52301600-52301800	Enhancers	NHDF-Ad	bronchial
7	chr8:52301600-52302200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr8:52301600-52302200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:52301600-52302200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:52301600-52302200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:52301600-52302200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr8:52301600-52302400	Enhancers	Fetal Lung	lung
13	chr8:52301600-52302800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:52301600-52302800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:52301600-52302800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:52301600-52302800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr8:52301600-52303000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr8:52301600-52303000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:52301600-52303000	Enhancers	Fetal Kidney	kidney
20	chr8:52301600-52303200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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