Variant report

Variant	rs28865671
Chromosome Location	chr8:52409208-52409209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10089640	0.92[AFR][1000 genomes]
rs10090385	1.00[AMR][1000 genomes]
rs10091000	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091540	1.00[AMR][1000 genomes]
rs10092414	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10093816	1.00[AMR][1000 genomes]
rs10094022	1.00[AMR][1000 genomes]
rs10098035	1.00[AMR][1000 genomes]
rs10098585	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10098829	1.00[AMR][1000 genomes]
rs10104237	1.00[AMR][1000 genomes]
rs10108607	1.00[AMR][1000 genomes]
rs13438832	1.00[AMR][1000 genomes]
rs13439874	1.00[AMR][1000 genomes]
rs16916174	1.00[AMR][1000 genomes]
rs16916198	1.00[AMR][1000 genomes]
rs16916220	1.00[AMR][1000 genomes]
rs16916238	1.00[AMR][1000 genomes]
rs16916388	1.00[AMR][1000 genomes]
rs16916400	1.00[AMR][1000 genomes]
rs16916413	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16916579	1.00[AMR][1000 genomes]
rs2392904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28407367	1.00[AMR][1000 genomes]
rs28433608	1.00[AMR][1000 genomes]
rs28445664	1.00[AMR][1000 genomes]
rs28525054	1.00[AMR][1000 genomes]
rs28560412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28629961	1.00[AMR][1000 genomes]
rs28665895	1.00[AMR][1000 genomes]
rs28734103	1.00[AMR][1000 genomes]
rs4327854	1.00[AMR][1000 genomes]
rs4460364	1.00[AMR][1000 genomes]
rs60306153	1.00[AMR][1000 genomes]
rs9942813	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932026	chr8:51858658-52758574	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv890895	chr8:52190571-52615191	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv817615	chr8:52252405-53023384	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:52374600-52411200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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