Variant report

Variant	rs10108374
Chromosome Location	chr8:130886878-130886879
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130884702..130887738-chr8:130891037..130893861,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10087750	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10090126	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10091204	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10091754	1.00[EUR][1000 genomes]
rs10093443	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10095752	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10097321	1.00[EUR][1000 genomes]
rs10098794	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10101179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10102037	1.00[EUR][1000 genomes]
rs10283332	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11984716	1.00[EUR][1000 genomes]
rs12334601	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16904147	1.00[EUR][1000 genomes]
rs16904151	1.00[EUR][1000 genomes]
rs1871943	1.00[EUR][1000 genomes]
rs28380012	1.00[EUR][1000 genomes]
rs28417973	1.00[EUR][1000 genomes]
rs28472437	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28520393	1.00[EUR][1000 genomes]
rs28533697	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28550585	1.00[EUR][1000 genomes]
rs28578248	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28593681	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28633939	1.00[EUR][1000 genomes]
rs28656330	1.00[EUR][1000 genomes]
rs28682337	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28685780	1.00[EUR][1000 genomes]
rs28795370	1.00[EUR][1000 genomes]
rs55662234	1.00[EUR][1000 genomes]
rs55755123	1.00[EUR][1000 genomes]
rs55864361	1.00[EUR][1000 genomes]
rs56770303	1.00[EUR][1000 genomes]
rs58136260	1.00[EUR][1000 genomes]
rs59372581	1.00[EUR][1000 genomes]
rs59501802	1.00[EUR][1000 genomes]
rs59799475	1.00[EUR][1000 genomes]
rs60229064	1.00[EUR][1000 genomes]
rs60282920	1.00[EUR][1000 genomes]
rs60366798	1.00[EUR][1000 genomes]
rs60403203	1.00[EUR][1000 genomes]
rs61417675	1.00[EUR][1000 genomes]
rs6999729	1.00[EUR][1000 genomes]
rs6999887	1.00[EUR][1000 genomes]
rs7011549	1.00[EUR][1000 genomes]
rs7013939	1.00[EUR][1000 genomes]
rs73712950	1.00[EUR][1000 genomes]
rs73712955	1.00[EUR][1000 genomes]
rs73712957	1.00[EUR][1000 genomes]
rs73712989	1.00[EUR][1000 genomes]
rs7812685	1.00[EUR][1000 genomes]
rs7812863	1.00[EUR][1000 genomes]
rs7814585	1.00[EUR][1000 genomes]
rs7825122	1.00[EUR][1000 genomes]
rs7831443	1.00[EUR][1000 genomes]
rs9693205	1.00[EUR][1000 genomes]
rs9886600	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130864400-130903600	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:130864600-130888200	Weak transcription	Small Intestine	intestine
3	chr8:130864800-130898200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:130865000-130897400	Weak transcription	Psoas Muscle	Psoas
5	chr8:130865200-130887200	Weak transcription	Fetal Kidney	kidney
6	chr8:130865200-130897600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr8:130865400-130899200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:130865600-130907600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:130866000-130894800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr8:130866400-130891600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr8:130868000-130891400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:130869800-130895800	Weak transcription	HepG2	liver
13	chr8:130869800-130897600	Weak transcription	Brain Angular Gyrus	brain
14	chr8:130871200-130887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:130871200-130896000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr8:130873600-130895600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr8:130873800-130887600	Weak transcription	Fetal Stomach	stomach
18	chr8:130874000-130899000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:130874600-130897600	Weak transcription	Brain Hippocampus Middle	brain
20	chr8:130875200-130897400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:130875800-130899400	Weak transcription	Fetal Intestine Large	intestine
22	chr8:130877200-130897400	Weak transcription	Fetal Intestine Small	intestine
23	chr8:130877200-130898800	Weak transcription	Lung	lung
24	chr8:130881800-130887800	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr8:130882000-130887600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr8:130882600-130887000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:130882600-130888400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:130882600-130889400	Weak transcription	K562	blood
29	chr8:130882800-130887200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr8:130882800-130887600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:130882800-130896000	Weak transcription	Pancreas	Pancrea
32	chr8:130882800-130897600	Weak transcription	Right Ventricle	heart
33	chr8:130882800-130898800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:130883000-130887200	Weak transcription	NHLF	lung
35	chr8:130883000-130887800	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr8:130883000-130888000	Weak transcription	Aorta	Aorta
37	chr8:130883000-130891400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr8:130883000-130895600	Weak transcription	Fetal Muscle Leg	muscle
39	chr8:130883000-130897400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr8:130883000-130897400	Weak transcription	Gastric	stomach
41	chr8:130883000-130897400	Weak transcription	Thymus	Thymus
42	chr8:130883000-130897800	Weak transcription	Esophagus	oesophagus
43	chr8:130883000-130897800	Weak transcription	Spleen	Spleen
44	chr8:130883200-130891600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr8:130883200-130899000	Weak transcription	Placenta	Placenta
46	chr8:130883200-130899200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr8:130883400-130887600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr8:130883400-130890800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:130883400-130891200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr8:130883400-130892400	Weak transcription	Primary B cells from cord blood	blood

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