Variant report

Variant	rs9886600
Chromosome Location	chr8:130858877-130858878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10087750	1.00[EUR][1000 genomes]
rs10090126	1.00[EUR][1000 genomes]
rs10091204	1.00[EUR][1000 genomes]
rs10091754	1.00[EUR][1000 genomes]
rs10093443	1.00[EUR][1000 genomes]
rs10095752	1.00[EUR][1000 genomes]
rs10097321	1.00[EUR][1000 genomes]
rs10098794	1.00[EUR][1000 genomes]
rs10101179	1.00[EUR][1000 genomes]
rs10102037	1.00[EUR][1000 genomes]
rs10108374	1.00[EUR][1000 genomes]
rs10283332	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984716	1.00[EUR][1000 genomes]
rs12334601	1.00[EUR][1000 genomes]
rs16904147	1.00[EUR][1000 genomes]
rs16904151	1.00[EUR][1000 genomes]
rs16904160	1.00[ASN][1000 genomes]
rs1871942	1.00[ASN][1000 genomes]
rs1871943	0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs28380012	1.00[EUR][1000 genomes]
rs28417973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28472437	1.00[EUR][1000 genomes]
rs28520393	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28533697	1.00[EUR][1000 genomes]
rs28550585	1.00[EUR][1000 genomes]
rs28578248	1.00[EUR][1000 genomes]
rs28593681	1.00[EUR][1000 genomes]
rs28633939	1.00[EUR][1000 genomes]
rs28656330	1.00[EUR][1000 genomes]
rs28682337	1.00[EUR][1000 genomes]
rs28685780	1.00[EUR][1000 genomes]
rs28795370	1.00[EUR][1000 genomes]
rs55662234	1.00[EUR][1000 genomes]
rs55755123	1.00[EUR][1000 genomes]
rs55864361	1.00[EUR][1000 genomes]
rs56770303	1.00[EUR][1000 genomes]
rs58136260	1.00[EUR][1000 genomes]
rs59372581	1.00[EUR][1000 genomes]
rs59501802	1.00[EUR][1000 genomes]
rs59799475	1.00[EUR][1000 genomes]
rs60229064	1.00[EUR][1000 genomes]
rs60282920	1.00[EUR][1000 genomes]
rs60366798	1.00[EUR][1000 genomes]
rs60403203	1.00[EUR][1000 genomes]
rs61417675	1.00[EUR][1000 genomes]
rs6990423	0.83[GIH][hapmap];1.00[ASN][1000 genomes]
rs6993757	1.00[ASN][1000 genomes]
rs6996782	1.00[ASN][1000 genomes]
rs6999729	1.00[EUR][1000 genomes]
rs6999887	1.00[EUR][1000 genomes]
rs7007654	1.00[ASN][1000 genomes]
rs7011549	1.00[EUR][1000 genomes]
rs7013939	1.00[EUR][1000 genomes]
rs73712950	1.00[EUR][1000 genomes]
rs73712955	1.00[EUR][1000 genomes]
rs73712957	1.00[EUR][1000 genomes]
rs73712989	1.00[EUR][1000 genomes]
rs7812685	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7812863	1.00[EUR][1000 genomes]
rs7814585	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815052	1.00[ASN][1000 genomes]
rs7825122	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7831443	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7846233	1.00[ASN][1000 genomes]
rs9693205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130839000-130860200	Weak transcription	Fetal Intestine Small	intestine
2	chr8:130839200-130882000	Weak transcription	Right Ventricle	heart
3	chr8:130845600-130882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:130846000-130882000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:130846400-130881800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:130847800-130863800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:130850000-130861200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:130850200-130860800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:130850200-130862200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:130850200-130863600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:130850200-130864200	Weak transcription	Small Intestine	intestine
12	chr8:130850800-130884000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:130851000-130883800	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr8:130851200-130878600	Weak transcription	Ovary	ovary
15	chr8:130851400-130859600	Strong transcription	A549	lung
16	chr8:130851400-130868000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:130851600-130860600	Weak transcription	Fetal Stomach	stomach
18	chr8:130851600-130884600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr8:130851800-130859400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:130851800-130860800	Weak transcription	NHDF-Ad	bronchial
21	chr8:130851800-130861800	Weak transcription	Colon Smooth Muscle	Colon
22	chr8:130851800-130875400	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr8:130852000-130860800	Weak transcription	Osteobl	bone
24	chr8:130852000-130867200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:130852000-130868000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:130852000-130875200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr8:130852000-130878600	Strong transcription	Fetal Thymus	thymus
28	chr8:130852000-130879400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr8:130852000-130883800	Strong transcription	Primary monocytes fromperipheralblood	blood
30	chr8:130852200-130859200	Strong transcription	HSMM	muscle
31	chr8:130852200-130860000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr8:130852200-130860400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr8:130852200-130860600	Strong transcription	Primary hematopoietic stem cells	blood
34	chr8:130852200-130860600	Weak transcription	NH-A	brain
35	chr8:130852200-130861800	Weak transcription	Brain Anterior Caudate	brain
36	chr8:130852200-130861800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr8:130852200-130862200	Weak transcription	Fetal Brain Male	brain
38	chr8:130852200-130862200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:130852200-130863200	Weak transcription	Brain Angular Gyrus	brain
40	chr8:130852200-130863200	Weak transcription	Brain Germinal Matrix	brain
41	chr8:130852200-130863400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr8:130852200-130863400	Weak transcription	Esophagus	oesophagus
43	chr8:130852200-130868000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:130852200-130868200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr8:130852200-130868600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:130852200-130883800	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr8:130852400-130859200	Strong transcription	Primary B cells from cord blood	blood
48	chr8:130852400-130860400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr8:130852400-130860400	Weak transcription	Brain Substantia Nigra	brain
50	chr8:130852400-130860400	Weak transcription	Fetal Kidney	kidney

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