Variant report

Variant	rs7846233
Chromosome Location	chr8:130854682-130854683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130854054..130855784-chr8:130863665..130866483,2	MCF-7	breast:
2	chr8:130852434..130855409-chr8:130857919..130860602,3	K562	blood:
3	chr8:130852731..130855092-chr8:130855258..130857778,2	MCF-7	breast:
4	chr8:130847403..130850109-chr8:130853585..130856096,3	K562	blood:
5	chr8:130850096..130852746-chr8:130854534..130856077,2	K562	blood:
6	chr8:130850282..130852746-chr8:130853910..130856034,2	K562	blood:

Variant related genes	Relation type
ENSG00000153310	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10283332	1.00[ASN][1000 genomes]
rs16904160	0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1871942	1.00[ASN][1000 genomes]
rs2086642	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs59478650	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6990423	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6993757	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6996782	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7007654	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7016028	0.81[AFR][1000 genomes]
rs7814585	1.00[ASN][1000 genomes]
rs7815052	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9886600	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130839000-130860200	Weak transcription	Fetal Intestine Small	intestine
2	chr8:130839200-130882000	Weak transcription	Right Ventricle	heart
3	chr8:130845600-130882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:130846000-130882000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:130846400-130881800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:130847600-130855200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:130847800-130855600	Weak transcription	Pancreas	Pancrea
8	chr8:130847800-130863800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:130850000-130861200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr8:130850200-130860800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:130850200-130862200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr8:130850200-130863600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr8:130850200-130864200	Weak transcription	Small Intestine	intestine
14	chr8:130850600-130855200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:130850600-130855400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:130850800-130884000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:130851000-130883800	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr8:130851200-130855200	Weak transcription	Dnd41	blood
19	chr8:130851200-130855600	Weak transcription	Gastric	stomach
20	chr8:130851200-130855600	Weak transcription	Right Atrium	heart
21	chr8:130851200-130856200	Strong transcription	Primary T cells from cord blood	blood
22	chr8:130851200-130878600	Weak transcription	Ovary	ovary
23	chr8:130851400-130859600	Strong transcription	A549	lung
24	chr8:130851400-130868000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr8:130851600-130860600	Weak transcription	Fetal Stomach	stomach
26	chr8:130851600-130884600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr8:130851800-130855600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:130851800-130859400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:130851800-130860800	Weak transcription	NHDF-Ad	bronchial
30	chr8:130851800-130861800	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:130851800-130875400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr8:130852000-130855400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr8:130852000-130856600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:130852000-130856800	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:130852000-130857800	Strong transcription	NHEK	skin
36	chr8:130852000-130860800	Weak transcription	Osteobl	bone
37	chr8:130852000-130867200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:130852000-130868000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr8:130852000-130875200	Strong transcription	Primary B cells from peripheral blood	blood
40	chr8:130852000-130878600	Strong transcription	Fetal Thymus	thymus
41	chr8:130852000-130879400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr8:130852000-130883800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr8:130852200-130854800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr8:130852200-130854800	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:130852200-130856400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr8:130852200-130859200	Strong transcription	HSMM	muscle
47	chr8:130852200-130860000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr8:130852200-130860400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr8:130852200-130860600	Strong transcription	Primary hematopoietic stem cells	blood
50	chr8:130852200-130860600	Weak transcription	NH-A	brain

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