Variant report

Variant	rs10283332
Chromosome Location	chr8:130877427-130877428
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10087750	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10090126	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10091204	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10091754	1.00[EUR][1000 genomes]
rs10093443	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10095752	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10097321	1.00[EUR][1000 genomes]
rs10098794	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10101179	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10102037	1.00[EUR][1000 genomes]
rs10108374	1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11984716	1.00[EUR][1000 genomes]
rs12334601	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16904147	1.00[EUR][1000 genomes]
rs16904151	1.00[EUR][1000 genomes]
rs16904160	1.00[ASN][1000 genomes]
rs1871942	1.00[ASN][1000 genomes]
rs1871943	1.00[EUR][1000 genomes]
rs28380012	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28417973	1.00[EUR][1000 genomes]
rs28472437	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28520393	1.00[EUR][1000 genomes]
rs28533697	1.00[EUR][1000 genomes]
rs28550585	1.00[EUR][1000 genomes]
rs28578248	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28593681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28633939	1.00[EUR][1000 genomes]
rs28656330	1.00[EUR][1000 genomes]
rs28682337	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28685780	1.00[EUR][1000 genomes]
rs28795370	1.00[EUR][1000 genomes]
rs55662234	1.00[EUR][1000 genomes]
rs55755123	1.00[EUR][1000 genomes]
rs55864361	1.00[EUR][1000 genomes]
rs56770303	1.00[EUR][1000 genomes]
rs58136260	1.00[EUR][1000 genomes]
rs59372581	1.00[EUR][1000 genomes]
rs59501802	1.00[EUR][1000 genomes]
rs59799475	1.00[EUR][1000 genomes]
rs60229064	1.00[EUR][1000 genomes]
rs60282920	1.00[EUR][1000 genomes]
rs60366798	1.00[EUR][1000 genomes]
rs60403203	1.00[EUR][1000 genomes]
rs61417675	1.00[EUR][1000 genomes]
rs6990423	1.00[ASN][1000 genomes]
rs6993757	1.00[ASN][1000 genomes]
rs6996782	1.00[ASN][1000 genomes]
rs6999729	1.00[EUR][1000 genomes]
rs6999887	1.00[EUR][1000 genomes]
rs7007654	1.00[ASN][1000 genomes]
rs7011549	1.00[EUR][1000 genomes]
rs7013939	1.00[EUR][1000 genomes]
rs73712950	1.00[EUR][1000 genomes]
rs73712955	1.00[EUR][1000 genomes]
rs73712957	1.00[EUR][1000 genomes]
rs73712989	1.00[EUR][1000 genomes]
rs7812685	1.00[EUR][1000 genomes]
rs7812863	1.00[EUR][1000 genomes]
rs7814585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815052	1.00[ASN][1000 genomes]
rs7825122	1.00[EUR][1000 genomes]
rs7831443	1.00[EUR][1000 genomes]
rs7846233	1.00[ASN][1000 genomes]
rs9693205	1.00[EUR][1000 genomes]
rs9886600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130839200-130882000	Weak transcription	Right Ventricle	heart
2	chr8:130845600-130882000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:130846000-130882000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr8:130846400-130881800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:130850800-130884000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:130851000-130883800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr8:130851200-130878600	Weak transcription	Ovary	ovary
8	chr8:130851600-130884600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr8:130852000-130878600	Strong transcription	Fetal Thymus	thymus
10	chr8:130852000-130879400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:130852000-130883800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr8:130852200-130883800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr8:130854000-130878800	Weak transcription	Colonic Mucosa	Colon
14	chr8:130860000-130882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:130862000-130882400	Weak transcription	NHLF	lung
16	chr8:130862600-130884400	Weak transcription	Fetal Brain Male	brain
17	chr8:130863600-130886800	Weak transcription	Fetal Lung	lung
18	chr8:130864000-130882400	Weak transcription	Esophagus	oesophagus
19	chr8:130864400-130903600	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:130864600-130882200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:130864600-130882400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr8:130864600-130882400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:130864600-130888200	Weak transcription	Small Intestine	intestine
24	chr8:130864800-130898200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:130865000-130897400	Weak transcription	Psoas Muscle	Psoas
26	chr8:130865200-130887200	Weak transcription	Fetal Kidney	kidney
27	chr8:130865200-130897600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr8:130865400-130882200	Weak transcription	Brain Germinal Matrix	brain
29	chr8:130865400-130899200	Weak transcription	Brain Cingulate Gyrus	brain
30	chr8:130865600-130907600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr8:130866000-130894800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:130866200-130885400	Weak transcription	Stomach Mucosa	stomach
33	chr8:130866400-130891600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr8:130868000-130891400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:130869400-130877800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:130869400-130879200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr8:130869400-130879600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr8:130869800-130895800	Weak transcription	HepG2	liver
39	chr8:130869800-130897600	Weak transcription	Brain Angular Gyrus	brain
40	chr8:130870200-130878600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr8:130870400-130883400	Weak transcription	Fetal Brain Female	brain
42	chr8:130870600-130877600	Strong transcription	Adipose Nuclei	Adipose
43	chr8:130870600-130878000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:130870600-130886000	Weak transcription	HUVEC	blood vessel
45	chr8:130870800-130882400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr8:130871000-130879200	Weak transcription	Osteobl	bone
47	chr8:130871000-130882600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr8:130871000-130884400	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr8:130871200-130882400	Weak transcription	Aorta	Aorta
50	chr8:130871200-130887600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links