Variant report

Variant	rs10109728
Chromosome Location	chr8:124575702-124575703
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124466204..124466710-chr8:124575524..124576463,2	MCF-7	breast:
2	chr8:124574966..124577834-chr8:124674515..124676204,2	MCF-7	breast:
3	chr8:124551947..124555089-chr8:124574852..124578718,4	MCF-7	breast:
4	chr8:124427734..124430376-chr8:124575604..124577355,2	MCF-7	breast:
5	chr8:124575271..124580118-chr8:124587417..124591995,7	MCF-7	breast:
6	chr8:124574833..124579835-chr8:124581420..124586695,7	MCF-7	breast:
7	chr8:124575550..124576439-chr8:124638158..124638909,2	MCF-7	breast:
8	chr8:124498365..124499355-chr8:124575418..124576285,3	MCF-7	breast:
9	chr8:124573924..124575811-chr8:124615788..124618041,2	MCF-7	breast:
10	chr8:124540299..124544028-chr8:124575261..124578367,3	MCF-7	breast:
11	chr8:124548751..124555755-chr8:124572914..124580106,12	MCF-7	breast:
12	chr8:124572458..124577349-chr8:124702422..124707183,6	MCF-7	breast:
13	chr8:124574004..124576603-chr8:124675208..124677787,2	MCF-7	breast:
14	chr8:124575452..124576205-chr8:124628574..124629465,2	MCF-7	breast:
15	chr8:124575528..124576396-chr8:124638141..124638658,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10088524	1.00[ASN][1000 genomes]
rs11779050	1.00[ASN][1000 genomes]
rs11787322	1.00[ASN][1000 genomes]
rs17253447	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17338685	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28369198	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490413	1.00[ASN][1000 genomes]
rs28634208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28634843	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28759235	1.00[EUR][1000 genomes]
rs55928410	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017648	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124575800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr8:124575600-124575800	ZNF genes & repeats	HMEC	breast
3	chr8:124575600-124576000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:124575600-124578200	Enhancers	Placenta	Placenta
5	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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