Variant report

Variant	rs28634843
Chromosome Location	chr8:124566270-124566271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10088524	1.00[ASN][1000 genomes]
rs10109728	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779050	1.00[ASN][1000 genomes]
rs11787322	1.00[ASN][1000 genomes]
rs17253447	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17338685	1.00[ASN][1000 genomes]
rs28369198	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490413	1.00[ASN][1000 genomes]
rs28634208	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28759235	0.82[EUR][1000 genomes]
rs55928410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017648	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124558800-124571400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:124564800-124566600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:124565000-124566600	Enhancers	Fetal Brain Male	brain
4	chr8:124565200-124567000	Weak transcription	NHEK	skin
5	chr8:124565400-124567800	Weak transcription	Fetal Stomach	stomach
6	chr8:124565400-124569800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:124565800-124566600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:124565800-124569600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:124565800-124569600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:124566000-124568200	Weak transcription	Adipose Nuclei	Adipose
11	chr8:124566000-124570000	Weak transcription	HMEC	breast
12	chr8:124566200-124566400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:124566200-124567000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links