Variant report

Variant	rs28759235
Chromosome Location	chr8:124582378-124582379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10109728	1.00[EUR][1000 genomes]
rs17253447	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17338685	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28369198	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28634208	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28634843	0.82[EUR][1000 genomes]
rs55928410	0.82[EUR][1000 genomes]
rs7017648	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124575600-124598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:124578800-124582800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:124580600-124582400	Enhancers	Psoas Muscle	Psoas
4	chr8:124581400-124582600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:124581400-124583200	Weak transcription	Right Atrium	heart
6	chr8:124581400-124583200	Weak transcription	HSMMtube	muscle
7	chr8:124581400-124584600	Weak transcription	Placenta	Placenta
8	chr8:124581400-124584800	Weak transcription	Esophagus	oesophagus
9	chr8:124581400-124585000	Weak transcription	Adipose Nuclei	Adipose
10	chr8:124581600-124582600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:124581600-124586400	Weak transcription	Fetal Heart	heart
12	chr8:124582000-124582600	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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