Variant report

Variant	rs10110842
Chromosome Location	chr8:130720121-130720122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130719927..130722565-chr8:130723755..130726675,2	MCF-7	breast:
2	chr8:130699308..130701478-chr8:130717660..130720655,2	K562	blood:
3	chr8:130717459..130720769-chr8:130721541..130726036,4	MCF-7	breast:
4	chr8:130717351..130718895-chr8:130719468..130721279,2	K562	blood:
5	chr8:130701843..130703503-chr8:130719583..130721644,2	K562	blood:
6	chr8:130700888..130706431-chr8:130718980..130724092,7	K562	blood:
7	chr8:130709112..130710957-chr8:130718766..130720271,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10092357	0.89[EUR][1000 genomes]
rs10111157	0.86[EUR][1000 genomes]
rs10217049	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11777392	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1481753	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1600794	0.84[EUR][1000 genomes]
rs28558572	0.86[EUR][1000 genomes]
rs28855534	0.88[EUR][1000 genomes]
rs28892959	0.88[EUR][1000 genomes]
rs3885952	0.89[EUR][1000 genomes]
rs4385436	0.86[EUR][1000 genomes]
rs4501554	0.96[EUR][1000 genomes]
rs4733558	0.88[EUR][1000 genomes]
rs4733559	0.86[EUR][1000 genomes]
rs4733730	0.98[EUR][1000 genomes]
rs4733731	0.98[EUR][1000 genomes]
rs4733735	0.88[EUR][1000 genomes]
rs55654760	0.84[EUR][1000 genomes]
rs62523852	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62523855	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62523857	0.88[EUR][1000 genomes]
rs7011037	0.90[ASN][1000 genomes]
rs7461495	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9297800	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8387	chr8:130711059-130756654	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130708200-130720200	Weak transcription	Esophagus	oesophagus
2	chr8:130716800-130720200	Weak transcription	Fetal Kidney	kidney
3	chr8:130717000-130720200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:130717000-130720200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:130719000-130720200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:130719000-130723200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:130719200-130720800	Enhancers	Dnd41	blood
8	chr8:130719200-130721000	Flanking Active TSS	HUVEC	blood vessel
9	chr8:130719200-130721400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:130719200-130723400	Enhancers	HMEC	breast
11	chr8:130719200-130723600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:130719200-130723800	Flanking Active TSS	A549	lung
13	chr8:130719400-130721200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:130719600-130723400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:130719800-130720200	Enhancers	NHLF	lung
16	chr8:130719800-130721600	Enhancers	Fetal Intestine Small	intestine
17	chr8:130719800-130721800	Enhancers	Fetal Heart	heart
18	chr8:130719800-130723600	Enhancers	NHDF-Ad	bronchial
19	chr8:130719800-130725600	Enhancers	K562	blood
20	chr8:130720000-130720400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:130720000-130720400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:130720000-130720400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:130720000-130720400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr8:130720000-130720600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:130720000-130720600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:130720000-130720600	Enhancers	Left Ventricle	heart
27	chr8:130720000-130720600	Flanking Active TSS	NHEK	skin
28	chr8:130720000-130720800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:130720000-130720800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:130720000-130720800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:130720000-130720800	Flanking Active TSS	NH-A	brain
32	chr8:130720000-130720800	Flanking Active TSS	Osteobl	bone
33	chr8:130720000-130721000	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr8:130720000-130721000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr8:130720000-130721000	Flanking Active TSS	Hela-S3	cervix
36	chr8:130720000-130721200	Enhancers	Small Intestine	intestine
37	chr8:130720000-130721400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:130720000-130721400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
39	chr8:130720000-130721600	Enhancers	Fetal Stomach	stomach
40	chr8:130720000-130721600	Enhancers	HSMMtube	muscle
41	chr8:130720000-130722200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr8:130720000-130722400	Enhancers	Fetal Lung	lung
43	chr8:130720000-130723400	Enhancers	Fetal Intestine Large	intestine
44	chr8:130720000-130723400	Enhancers	HSMM	muscle

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