Variant report

Variant	rs9297800
Chromosome Location	chr8:130763708-130763709
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10092357	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104476	0.83[EUR][1000 genomes]
rs10110842	0.86[EUR][1000 genomes]
rs10111157	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217049	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956493	1.00[CHB][hapmap]
rs11777392	0.93[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1481753	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1600794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600932	1.00[CHB][hapmap]
rs1600933	1.00[CHB][hapmap]
rs1600934	1.00[CHB][hapmap]
rs17190932	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1842793	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1967019	1.00[CHB][hapmap]
rs2086639	0.93[ASN][1000 genomes]
rs2086640	0.93[ASN][1000 genomes]
rs2101163	0.93[ASN][1000 genomes]
rs2624801	0.86[ASN][1000 genomes]
rs28558572	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855534	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28892959	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs298621	1.00[CHB][hapmap]
rs298622	1.00[CHB][hapmap]
rs298623	0.80[ASN][1000 genomes]
rs3885952	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3963418	0.93[ASN][1000 genomes]
rs4385436	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4501554	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4606023	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4733558	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4733730	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4733731	0.88[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4733735	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4733736	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55654760	0.86[ASN][1000 genomes]
rs59192669	0.93[ASN][1000 genomes]
rs60977383	0.93[ASN][1000 genomes]
rs61071273	0.93[ASN][1000 genomes]
rs62523852	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62523855	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62523857	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7461495	0.93[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs967974	1.00[CHB][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130754600-130766000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:130755600-130764000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:130758200-130765400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130758400-130763800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:130759200-130765800	Strong transcription	NHEK	skin
6	chr8:130759800-130765800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr8:130760200-130765800	Strong transcription	Esophagus	oesophagus
8	chr8:130763200-130764000	Weak transcription	Spleen	Spleen
9	chr8:130763200-130764400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:130763400-130766200	Enhancers	Left Ventricle	heart
11	chr8:130763600-130766200	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links