Variant report

Variant	rs3963418
Chromosome Location	chr8:130803642-130803643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10092357	0.93[ASN][1000 genomes]
rs10111157	0.93[ASN][1000 genomes]
rs10217049	0.86[ASN][1000 genomes]
rs10956493	0.83[ASN][1000 genomes]
rs1481753	0.86[ASN][1000 genomes]
rs1600794	0.93[ASN][1000 genomes]
rs1600933	0.83[ASN][1000 genomes]
rs1600934	0.83[ASN][1000 genomes]
rs17190932	1.00[ASN][1000 genomes]
rs1842793	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1967019	0.83[ASN][1000 genomes]
rs2086639	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2086640	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101163	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624801	0.93[ASN][1000 genomes]
rs28558572	0.93[ASN][1000 genomes]
rs28855534	0.93[ASN][1000 genomes]
rs28892959	0.93[ASN][1000 genomes]
rs298623	0.87[ASN][1000 genomes]
rs3885952	0.93[ASN][1000 genomes]
rs390079	0.81[ASN][1000 genomes]
rs4385436	0.93[ASN][1000 genomes]
rs4501554	0.86[ASN][1000 genomes]
rs4606023	0.87[ASN][1000 genomes]
rs4733558	0.93[ASN][1000 genomes]
rs4733559	0.93[ASN][1000 genomes]
rs4733730	0.86[ASN][1000 genomes]
rs4733731	0.86[ASN][1000 genomes]
rs4733735	0.81[ASN][1000 genomes]
rs4733736	0.87[ASN][1000 genomes]
rs55654760	0.80[ASN][1000 genomes]
rs56757322	0.83[ASN][1000 genomes]
rs57521849	0.83[ASN][1000 genomes]
rs58767048	0.83[ASN][1000 genomes]
rs59192669	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60746191	0.83[ASN][1000 genomes]
rs60977383	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61071273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523852	0.86[ASN][1000 genomes]
rs62523855	0.86[ASN][1000 genomes]
rs6981982	0.83[ASN][1000 genomes]
rs7461495	0.86[ASN][1000 genomes]
rs9297800	0.93[ASN][1000 genomes]
rs967974	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130801000-130809400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:130801800-130809400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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