Variant report

Variant	rs1600934
Chromosome Location	chr8:130786737-130786738
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10956493	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1600794	1.00[CHB][hapmap]
rs1600932	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1600933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17190932	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1842793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1967019	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2086639	0.83[ASN][1000 genomes]
rs2086640	0.83[ASN][1000 genomes]
rs2101163	0.83[ASN][1000 genomes]
rs2170569	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2624809	1.00[JPT][hapmap]
rs2624810	1.00[JPT][hapmap]
rs298608	1.00[JPT][hapmap]
rs298621	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs298622	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs3963418	0.83[ASN][1000 genomes]
rs439184	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs4733559	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs4733731	0.83[CHD][hapmap]
rs56757322	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57521849	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58767048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59192669	0.83[ASN][1000 genomes]
rs60746191	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60977383	0.83[ASN][1000 genomes]
rs61071273	0.83[ASN][1000 genomes]
rs6981982	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7461495	0.83[CHD][hapmap]
rs7812863	0.82[AFR][1000 genomes]
rs837083	1.00[JPT][hapmap]
rs9297800	1.00[CHB][hapmap]
rs967974	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130780000-130787200	Weak transcription	NHEK	skin
2	chr8:130780200-130787200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:130780400-130790200	Weak transcription	Spleen	Spleen
4	chr8:130780400-130797000	Weak transcription	Esophagus	oesophagus
5	chr8:130781800-130789000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:130785400-130790600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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