Variant report

Variant	rs1842793
Chromosome Location	chr8:130787684-130787685
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130786998..130788884-chr8:130797145..130799397,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147697	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10092357	0.93[ASN][1000 genomes]
rs10111157	0.93[ASN][1000 genomes]
rs10217049	0.86[ASN][1000 genomes]
rs10956493	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1481753	0.86[ASN][1000 genomes]
rs1600794	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1600932	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs1600933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1600934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17190932	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967019	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2086639	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2086640	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2101163	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2170569	0.99[EUR][1000 genomes]
rs2624801	0.93[ASN][1000 genomes]
rs2624809	1.00[JPT][hapmap]
rs2624810	1.00[JPT][hapmap]
rs28558572	0.93[ASN][1000 genomes]
rs28855534	0.93[ASN][1000 genomes]
rs28892959	0.93[ASN][1000 genomes]
rs298608	1.00[JPT][hapmap]
rs298621	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs298622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs298623	0.87[ASN][1000 genomes]
rs3885952	0.93[ASN][1000 genomes]
rs390079	0.81[ASN][1000 genomes]
rs3963418	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4385436	0.93[ASN][1000 genomes]
rs439184	1.00[JPT][hapmap]
rs4501554	0.86[ASN][1000 genomes]
rs4606023	0.87[ASN][1000 genomes]
rs4733558	0.93[ASN][1000 genomes]
rs4733559	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4733730	0.86[ASN][1000 genomes]
rs4733731	0.86[ASN][1000 genomes]
rs4733735	0.81[ASN][1000 genomes]
rs4733736	0.87[ASN][1000 genomes]
rs55654760	0.80[ASN][1000 genomes]
rs56757322	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs57521849	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58767048	0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59192669	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60746191	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60977383	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61071273	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62523852	0.86[ASN][1000 genomes]
rs62523855	0.86[ASN][1000 genomes]
rs6981982	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7461495	0.86[ASN][1000 genomes]
rs837083	1.00[JPT][hapmap]
rs9297800	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs967974	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130780400-130790200	Weak transcription	Spleen	Spleen
2	chr8:130780400-130797000	Weak transcription	Esophagus	oesophagus
3	chr8:130781800-130789000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130785400-130790600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:130787200-130790200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:130787200-130790400	Strong transcription	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links