Variant report

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10092357	0.86[ASN][1000 genomes]
rs10111157	0.86[ASN][1000 genomes]
rs10956493	1.00[JPT][hapmap]
rs1600794	0.86[ASN][1000 genomes]
rs1600932	1.00[JPT][hapmap]
rs1600933	1.00[JPT][hapmap]
rs1600934	1.00[JPT][hapmap]
rs17190932	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1842793	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1967019	1.00[JPT][hapmap]
rs2086639	0.93[ASN][1000 genomes]
rs2086640	0.93[ASN][1000 genomes]
rs2101163	0.93[ASN][1000 genomes]
rs2624809	1.00[JPT][hapmap]
rs2624810	1.00[JPT][hapmap]
rs28558572	0.86[ASN][1000 genomes]
rs28855534	0.86[ASN][1000 genomes]
rs28892959	0.86[ASN][1000 genomes]
rs298608	1.00[JPT][hapmap]
rs298621	1.00[JPT][hapmap]
rs298622	1.00[JPT][hapmap]
rs298623	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3885952	0.86[ASN][1000 genomes]
rs390079	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3963418	0.93[ASN][1000 genomes]
rs4385436	0.86[ASN][1000 genomes]
rs439184	1.00[JPT][hapmap]
rs4606023	0.80[ASN][1000 genomes]
rs4733558	0.86[ASN][1000 genomes]
rs4733559	0.86[ASN][1000 genomes]
rs4733736	0.80[ASN][1000 genomes]
rs59192669	0.93[ASN][1000 genomes]
rs60977383	0.93[ASN][1000 genomes]
rs61071273	0.93[ASN][1000 genomes]
rs837083	1.00[JPT][hapmap]
rs9297800	0.86[ASN][1000 genomes]
rs967974	1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522535	chr8:130804293-130844400	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv526686	chr8:130808973-130839132	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130826200-130830200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:130827600-130829400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130827800-130828400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:130827800-130832000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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