Variant report

Variant	rs2086639
Chromosome Location	chr8:130809688-130809689
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10092357	0.93[ASN][1000 genomes]
rs10111157	0.93[ASN][1000 genomes]
rs10217049	0.86[ASN][1000 genomes]
rs10956493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1481753	0.86[ASN][1000 genomes]
rs1600794	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs1600932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1600933	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1600934	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.83[ASN][1000 genomes]
rs17190932	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs1842793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1967019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2086640	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101163	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2624801	0.93[ASN][1000 genomes]
rs2624809	1.00[JPT][hapmap]
rs2624810	1.00[JPT][hapmap]
rs28558572	0.93[ASN][1000 genomes]
rs28855534	0.93[ASN][1000 genomes]
rs28892959	0.93[ASN][1000 genomes]
rs298608	1.00[JPT][hapmap]
rs298621	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs298622	1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap]
rs298623	0.87[ASN][1000 genomes]
rs3885952	0.93[ASN][1000 genomes]
rs390079	0.81[ASN][1000 genomes]
rs3963418	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385436	0.93[ASN][1000 genomes]
rs439184	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs4501554	0.86[ASN][1000 genomes]
rs4606023	0.87[ASN][1000 genomes]
rs4733558	0.93[ASN][1000 genomes]
rs4733559	1.00[CHB][hapmap];0.83[CHD][hapmap];0.93[ASN][1000 genomes]
rs4733730	0.86[ASN][1000 genomes]
rs4733731	0.83[CHD][hapmap];0.86[ASN][1000 genomes]
rs4733735	0.81[ASN][1000 genomes]
rs4733736	0.87[ASN][1000 genomes]
rs55654760	0.80[ASN][1000 genomes]
rs56757322	0.83[ASN][1000 genomes]
rs57521849	0.83[ASN][1000 genomes]
rs58767048	0.83[ASN][1000 genomes]
rs59192669	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60746191	0.83[ASN][1000 genomes]
rs60977383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61071273	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523852	0.86[ASN][1000 genomes]
rs62523855	0.86[ASN][1000 genomes]
rs6981982	0.83[ASN][1000 genomes]
rs7461495	0.83[CHD][hapmap];0.86[ASN][1000 genomes]
rs837083	1.00[JPT][hapmap]
rs9297800	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs967974	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv522535	chr8:130804293-130844400	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv526686	chr8:130808973-130839132	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130808400-130809800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:130808400-130811200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:130809200-130810000	Enhancers	NHEK	skin
4	chr8:130809400-130809800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:130809400-130810000	Enhancers	HMEC	breast
6	chr8:130809400-130810200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:130809600-130809800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

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