Variant report

Variant	rs1967019
Chromosome Location	chr8:130772905-130772906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10956493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1600794	1.00[CHB][hapmap]
rs1600932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1600933	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1600934	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17190932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1842793	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2086639	0.83[ASN][1000 genomes]
rs2086640	0.83[ASN][1000 genomes]
rs2101163	0.83[ASN][1000 genomes]
rs2170569	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2624809	1.00[JPT][hapmap]
rs2624810	1.00[JPT][hapmap]
rs298608	1.00[JPT][hapmap]
rs298621	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs298622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3963418	0.83[ASN][1000 genomes]
rs439184	1.00[JPT][hapmap]
rs4606023	0.83[ASN][1000 genomes]
rs4733559	1.00[CHB][hapmap]
rs4733736	0.83[ASN][1000 genomes]
rs56757322	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57521849	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58767048	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59192669	0.83[ASN][1000 genomes]
rs60746191	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60977383	0.83[ASN][1000 genomes]
rs61071273	0.83[ASN][1000 genomes]
rs6981982	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs837083	1.00[JPT][hapmap]
rs9297800	1.00[CHB][hapmap]
rs967974	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428524	chr8:130731660-130894467	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv1023632	chr8:130767066-130777995	Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130765800-130779200	Weak transcription	Spleen	Spleen
2	chr8:130766600-130773400	Weak transcription	Esophagus	oesophagus
3	chr8:130767200-130774800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:130767200-130780600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:130767400-130773200	Weak transcription	NHEK	skin
6	chr8:130771800-130776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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