Variant report
Variant | rs10111596 |
---|---|
Chromosome Location | chr8:50104488-50104489 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr8:50104222..50107867-chr8:50114217..50118175,4 | K562 | blood: |
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-C8orf22-2 | chr8:50103993-50107149 | NONHSAT126506 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10089125 | 0.87[AMR][1000 genomes] |
rs10091956 | 0.87[AMR][1000 genomes] |
rs10092444 | 0.81[AMR][1000 genomes] |
rs10095176 | 0.87[AMR][1000 genomes] |
rs10103577 | 0.87[AMR][1000 genomes] |
rs10110314 | 0.87[AMR][1000 genomes] |
rs10504075 | 0.87[AMR][1000 genomes] |
rs1383275 | 0.87[AMR][1000 genomes] |
rs16905547 | 0.87[AMR][1000 genomes] |
rs16906644 | 0.87[AMR][1000 genomes] |
rs16939633 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes] |
rs16939637 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs2219895 | 0.87[AMR][1000 genomes] |
rs2726712 | 0.92[YRI][hapmap] |
rs28458224 | 0.82[AMR][1000 genomes] |
rs58868654 | 0.87[AMR][1000 genomes] |
rs6472298 | 0.87[AMR][1000 genomes] |
rs6472331 | 0.87[AMR][1000 genomes] |
rs6981837 | 0.87[AMR][1000 genomes] |
rs6989816 | 0.87[AMR][1000 genomes] |
rs6990367 | 0.87[AMR][1000 genomes] |
rs7001428 | 0.87[AMR][1000 genomes] |
rs7001632 | 0.87[AMR][1000 genomes] |
rs7004205 | 0.87[AMR][1000 genomes] |
rs7012220 | 0.87[AMR][1000 genomes] |
rs7817386 | 0.87[AMR][1000 genomes] |
rs7817873 | 0.81[AMR][1000 genomes] |
rs7827967 | 0.87[AMR][1000 genomes] |
rs7835124 | 0.87[AMR][1000 genomes] |
rs9657085 | 0.87[AMR][1000 genomes] |
rs9694101 | 0.87[AMR][1000 genomes] |
rs9969500 | 0.87[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1025068 | chr8:49953397-50370208 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
2 | nsv1034908 | chr8:50023423-50416049 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv539601 | chr8:50023423-50416049 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1024410 | chr8:50037085-50511501 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv428517 | chr8:50094920-50232993 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
No data |