Variant report
| Variant | rs16939637 |
|---|---|
| Chromosome Location | chr8:50109004-50109005 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:49959412..49962230-chr8:50108460..50111062,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10089125 | 1.00[AMR][1000 genomes] |
| rs10091956 | 1.00[AMR][1000 genomes] |
| rs10092444 | 0.93[AMR][1000 genomes] |
| rs10095176 | 1.00[AMR][1000 genomes] |
| rs10110314 | 1.00[AMR][1000 genomes] |
| rs10111596 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs10504075 | 1.00[AMR][1000 genomes] |
| rs1383275 | 1.00[AMR][1000 genomes] |
| rs16905547 | 1.00[AMR][1000 genomes] |
| rs16906644 | 1.00[AMR][1000 genomes] |
| rs16939633 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs2219895 | 1.00[AMR][1000 genomes] |
| rs2726709 | 0.80[YRI][hapmap] |
| rs2726712 | 0.96[YRI][hapmap] |
| rs28458224 | 0.94[AMR][1000 genomes] |
| rs58868654 | 1.00[AMR][1000 genomes] |
| rs6472298 | 1.00[AMR][1000 genomes] |
| rs6472331 | 1.00[AMR][1000 genomes] |
| rs6981837 | 1.00[AMR][1000 genomes] |
| rs6989816 | 1.00[AMR][1000 genomes] |
| rs6990367 | 1.00[AMR][1000 genomes] |
| rs7001428 | 1.00[AMR][1000 genomes] |
| rs7001632 | 1.00[AMR][1000 genomes] |
| rs7004205 | 1.00[AMR][1000 genomes] |
| rs7012220 | 1.00[AMR][1000 genomes] |
| rs7817386 | 1.00[AMR][1000 genomes] |
| rs7817873 | 0.93[AMR][1000 genomes] |
| rs7827967 | 1.00[AMR][1000 genomes] |
| rs7835124 | 1.00[AMR][1000 genomes] |
| rs9657085 | 1.00[AMR][1000 genomes] |
| rs9694101 | 1.00[AMR][1000 genomes] |
| rs9969500 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025068 | chr8:49953397-50370208 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034908 | chr8:50023423-50416049 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv539601 | chr8:50023423-50416049 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1024410 | chr8:50037085-50511501 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv428517 | chr8:50094920-50232993 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:50109000-50109600 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
| 2 | chr8:50109000-50109600 | Enhancers | HUES6 Cell Line | embryonic stem cell |
