Variant report

Variant	rs10089125
Chromosome Location	chr8:50123705-50123706
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10091956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10092444	0.93[AMR][1000 genomes]
rs10095176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10110314	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111596	0.87[AMR][1000 genomes]
rs10504075	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1383275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16905547	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16906644	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16939633	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16939637	1.00[AMR][1000 genomes]
rs2219895	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28458224	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs58868654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472298	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6472331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6981837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6989816	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6990367	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001428	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7001632	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7004205	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7012220	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7817386	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7817873	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7827967	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7835124	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9657085	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9694101	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9969500	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv428517	chr8:50094920-50232993	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv890855	chr8:50109365-50252962	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50121400-50124800	Weak transcription	K562	blood
2	chr8:50122400-50123800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:50123200-50128800	Weak transcription	Stomach Mucosa	stomach
4	chr8:50123200-50129600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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