Variant report

Variant	rs10112324
Chromosome Location	chr8:91589058-91589059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91586951..91591432-chr8:91656063..91661127,8	MCF-7	breast:
2	chr8:91569217..91570978-chr8:91587022..91589931,2	MCF-7	breast:
3	chr8:91565327..91567860-chr8:91586497..91589289,2	MCF-7	breast:
4	chr8:91584429..91589445-chr8:91589711..91593163,5	K562	blood:

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10086759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104794	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108192	1.00[ASN][1000 genomes]
rs10109899	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1079391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987848	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988668	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993890	0.86[ASN][1000 genomes]
rs11995946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998346	0.86[ASN][1000 genomes]
rs2023625	0.86[ASN][1000 genomes]
rs28400375	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417676	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28551179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28635136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28691863	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35387069	1.00[ASN][1000 genomes]
rs56814535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57435451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59462227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61206785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471183	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6986783	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994951	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016094	1.00[ASN][1000 genomes]
rs73692553	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73692592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692599	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73697731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7829187	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297872	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91585600-91590800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:91585800-91591000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:91586000-91590600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:91586600-91590600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:91586600-91591000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:91587000-91590800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:91587400-91590600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr8:91588000-91591400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:91588200-91589400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:91588200-91592600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:91588200-91592600	Weak transcription	HSMM	muscle
12	chr8:91588400-91589200	Weak transcription	K562	blood
13	chr8:91588400-91590400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:91588400-91591400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:91588400-91592200	Weak transcription	HSMMtube	muscle
16	chr8:91588600-91589400	Weak transcription	Fetal Heart	heart
17	chr8:91588600-91591600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:91589000-91590800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links