Variant report

Variant	rs28551179
Chromosome Location	chr8:91581518-91581519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91579817..91581638-chr8:91582195..91584431,2	MCF-7	breast:
2	chr8:90996350..90998104-chr8:91581429..91583990,2	K562	blood:
3	chr8:91581416..91584042-chr8:91589576..91591168,2	K562	blood:
4	chr8:91012503..91016326-chr8:91580464..91585421,8	MCF-7	breast:
5	chr8:91013689..91014427-chr8:91580931..91581653,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DECR1-1	chr8:91581363-91581546	ENSG00000253394

Variant related genes	Relation type
ENSG00000104325	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10086759	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089529	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103696	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104794	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108192	1.00[ASN][1000 genomes]
rs10109899	1.00[ASN][1000 genomes]
rs10112324	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1079391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985696	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987848	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993444	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993890	0.86[ASN][1000 genomes]
rs11995946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998346	0.86[ASN][1000 genomes]
rs2023625	0.86[ASN][1000 genomes]
rs28400375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28635136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28691863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35387069	1.00[ASN][1000 genomes]
rs56814535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57435451	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59462227	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61206785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471183	1.00[ASN][1000 genomes]
rs6986783	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989081	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994951	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016094	1.00[ASN][1000 genomes]
rs73692553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692591	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73692592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692599	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73697731	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814269	1.00[EUR][1000 genomes]
rs7829187	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7829606	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297872	1.00[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91571000-91584600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:91580200-91582400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:91580400-91581800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:91580400-91581800	Enhancers	HMEC	breast
5	chr8:91580400-91588200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:91580600-91581800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:91580600-91581800	Enhancers	NHEK	skin
8	chr8:91580600-91586000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:91580600-91587000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:91580800-91581600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:91580800-91581800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:91580800-91582800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:91581000-91581600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr8:91581000-91581800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:91581000-91581800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:91581000-91581800	Enhancers	Osteobl	bone
17	chr8:91581200-91581600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr8:91581200-91581600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:91581200-91581800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:91581200-91581800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr8:91581200-91581800	Enhancers	NH-A	brain
22	chr8:91581200-91582000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr8:91581200-91582000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr8:91581200-91583400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:91581200-91583800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:91581400-91584600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr8:91581400-91585200	Weak transcription	Fetal Heart	heart

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