Variant report

Variant	rs7829606
Chromosome Location	chr8:91640614-91640615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91590970..91593547-chr8:91640454..91643139,2	MCF-7	breast:
2	chr8:91637038..91640494-chr8:91640523..91644526,4	MCF-7	breast:
3	chr8:91637648..91642944-chr8:91643951..91646932,7	MCF-7	breast:
4	chr8:91634882..91636452-chr8:91639541..91641739,2	MCF-7	breast:
5	chr8:91232304..91234440-chr8:91638793..91641094,2	K562	blood:

Variant related genes	Relation type
ENSG00000253394	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10086759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089435	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10089529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10108192	1.00[ASN][1000 genomes]
rs10109899	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10112324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1079391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11987848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11988668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11990535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993257	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993890	0.97[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11995946	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11998346	0.86[ASN][1000 genomes]
rs2023625	1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs28400375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28417676	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28551179	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28635136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28691863	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35387069	1.00[ASN][1000 genomes]
rs56814535	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57435451	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59462227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61206785	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471183	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6986783	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007768	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016094	1.00[ASN][1000 genomes]
rs73692553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692591	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73692592	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73692599	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73697731	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7814269	1.00[EUR][1000 genomes]
rs7815915	0.89[YRI][hapmap]
rs7823964	0.89[YRI][hapmap]
rs7829187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297872	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827745	chr8:91623737-91660193	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:91624000-91654800	Weak transcription	Pancreas	Pancrea
3	chr8:91624200-91652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:91624400-91644800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr8:91628200-91650400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:91628600-91652000	Weak transcription	HUVEC	blood vessel
7	chr8:91629200-91650200	Weak transcription	Esophagus	oesophagus
8	chr8:91629200-91653400	Weak transcription	Ovary	ovary
9	chr8:91629200-91654600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:91629400-91640800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:91629400-91645200	Weak transcription	NHDF-Ad	bronchial
12	chr8:91629600-91654400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:91630200-91642200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:91630600-91642200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:91630600-91649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:91630600-91653600	Weak transcription	Fetal Intestine Small	intestine
17	chr8:91630600-91654200	Weak transcription	HSMMtube	muscle
18	chr8:91630600-91654400	Weak transcription	Fetal Muscle Leg	muscle
19	chr8:91630600-91655000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:91630600-91656800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:91630800-91652200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr8:91630800-91654400	Weak transcription	Fetal Intestine Large	intestine
23	chr8:91631000-91641000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr8:91631000-91654800	Weak transcription	NH-A	brain
25	chr8:91631200-91654400	Weak transcription	Psoas Muscle	Psoas
26	chr8:91632000-91656800	Weak transcription	Left Ventricle	heart
27	chr8:91632400-91652200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:91632600-91650200	Weak transcription	Right Atrium	heart
29	chr8:91632800-91641400	Enhancers	Brain Hippocampus Middle	brain
30	chr8:91632800-91654600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr8:91633200-91652200	Weak transcription	NHLF	lung
32	chr8:91633800-91650400	Weak transcription	Adipose Nuclei	Adipose
33	chr8:91634200-91650400	Weak transcription	Fetal Lung	lung
34	chr8:91634800-91652200	Weak transcription	Hela-S3	cervix
35	chr8:91635200-91645200	Weak transcription	NHEK	skin
36	chr8:91635200-91647200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr8:91636600-91647000	Weak transcription	K562	blood
38	chr8:91636800-91641000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr8:91637200-91641600	Enhancers	Primary B cells from peripheral blood	blood
40	chr8:91637600-91652200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr8:91637800-91641000	Enhancers	Brain Cingulate Gyrus	brain
42	chr8:91637800-91642400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:91638000-91645000	Weak transcription	HMEC	breast
44	chr8:91638000-91646600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:91638200-91654800	Weak transcription	Placenta	Placenta
46	chr8:91638400-91641800	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr8:91638400-91641800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:91638600-91642400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:91638600-91645400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr8:91638600-91645400	Weak transcription	Muscle Satellite Cultured Cells	--

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