Variant report

Variant	rs10113488
Chromosome Location	chr8:89361766-89361767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10086466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10955587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10955595	1.00[EUR][1000 genomes]
rs12056481	1.00[AMR][1000 genomes]
rs13277095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1519932	1.00[EUR][1000 genomes]
rs1915012	1.00[EUR][1000 genomes]
rs1915014	1.00[EUR][1000 genomes]
rs28904629	1.00[EUR][1000 genomes]
rs28907893	1.00[EUR][1000 genomes]
rs28986475	1.00[EUR][1000 genomes]
rs28986493	1.00[EUR][1000 genomes]
rs28986495	1.00[EUR][1000 genomes]
rs28986496	1.00[EUR][1000 genomes]
rs4246110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4246114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4269586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4279647	1.00[EUR][1000 genomes]
rs4434663	1.00[EUR][1000 genomes]
rs4477078	1.00[EUR][1000 genomes]
rs4551413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4615622	1.00[EUR][1000 genomes]
rs4961088	1.00[EUR][1000 genomes]
rs61229022	1.00[EUR][1000 genomes]
rs6469370	1.00[EUR][1000 genomes]
rs6469389	1.00[EUR][1000 genomes]
rs6469391	1.00[EUR][1000 genomes]
rs6993984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010134	1.00[EUR][1000 genomes]
rs7845946	1.00[EUR][1000 genomes]
rs9656890	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9656891	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891171	chr8:89342944-89439469	Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89357600-89365800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links