Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10086466	1.00[EUR][1000 genomes]
rs10113488	1.00[EUR][1000 genomes]
rs10955595	1.00[EUR][1000 genomes]
rs11997592	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs12547854	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13253856	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs13277095	1.00[EUR][1000 genomes]
rs1519932	1.00[EUR][1000 genomes]
rs1600063	1.00[EUR][1000 genomes]
rs1915012	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28904629	1.00[EUR][1000 genomes]
rs28907893	1.00[EUR][1000 genomes]
rs28986475	1.00[EUR][1000 genomes]
rs28986493	1.00[EUR][1000 genomes]
rs28986495	1.00[EUR][1000 genomes]
rs28986496	1.00[EUR][1000 genomes]
rs4246114	1.00[EUR][1000 genomes]
rs4269586	1.00[EUR][1000 genomes]
rs4279647	1.00[EUR][1000 genomes]
rs4434663	1.00[EUR][1000 genomes]
rs4477078	1.00[EUR][1000 genomes]
rs4551413	1.00[EUR][1000 genomes]
rs4615622	1.00[EUR][1000 genomes]
rs4961088	1.00[EUR][1000 genomes]
rs61229022	1.00[EUR][1000 genomes]
rs6469370	1.00[EUR][1000 genomes]
rs6469389	1.00[EUR][1000 genomes]
rs6469391	1.00[EUR][1000 genomes]
rs6993984	1.00[EUR][1000 genomes]
rs7010134	1.00[EUR][1000 genomes]
rs7845946	1.00[EUR][1000 genomes]
rs9656890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89160800-89217200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:89177200-89214400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:89177200-89216400	Weak transcription	Brain Germinal Matrix	brain
4	chr8:89178000-89205200	Weak transcription	Fetal Stomach	stomach
5	chr8:89190600-89202800	Weak transcription	NH-A	brain
6	chr8:89191800-89203000	Weak transcription	HUVEC	blood vessel
7	chr8:89195000-89219200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:89195800-89210600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr8:89196600-89214200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:89196800-89214800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr8:89198000-89203000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:89198200-89202200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:89198800-89207000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:89200400-89206600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:89201200-89218000	Weak transcription	Fetal Lung	lung

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