Variant report

Variant	rs1600063
Chromosome Location	chr8:89117269-89117270
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1519932	1.00[EUR][1000 genomes]
rs1915012	1.00[EUR][1000 genomes]
rs1915014	1.00[EUR][1000 genomes]
rs28904629	1.00[EUR][1000 genomes]
rs28907893	1.00[EUR][1000 genomes]
rs28986475	1.00[EUR][1000 genomes]
rs28986493	1.00[EUR][1000 genomes]
rs28986495	1.00[EUR][1000 genomes]
rs28986496	1.00[EUR][1000 genomes]
rs61229022	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89091600-89132600	Weak transcription	Aorta	Aorta
2	chr8:89110800-89120400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr8:89110800-89123800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:89110800-89128200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:89110800-89132400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:89110800-89132600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:89110800-89132800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:89110800-89139200	Weak transcription	Fetal Lung	lung
9	chr8:89110800-89140000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr8:89111000-89124400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:89113800-89132600	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:89114400-89118400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:89114600-89123800	Weak transcription	Osteobl	bone
14	chr8:89114600-89124200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:89114600-89126400	Weak transcription	HUVEC	blood vessel
16	chr8:89114800-89127400	Weak transcription	Fetal Brain Female	brain
17	chr8:89115000-89126400	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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