Variant report

Variant	rs61229022
Chromosome Location	chr8:89310338-89310339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:89309729..89311654-chr8:89312036..89314800,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10086466	1.00[EUR][1000 genomes]
rs10113488	1.00[EUR][1000 genomes]
rs10955595	1.00[EUR][1000 genomes]
rs13277095	1.00[EUR][1000 genomes]
rs1519932	1.00[EUR][1000 genomes]
rs1600063	1.00[EUR][1000 genomes]
rs1915012	1.00[EUR][1000 genomes]
rs1915014	1.00[EUR][1000 genomes]
rs28904629	1.00[EUR][1000 genomes]
rs28907893	1.00[EUR][1000 genomes]
rs28986475	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28986493	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28986495	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28986496	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4246114	1.00[EUR][1000 genomes]
rs4269586	1.00[EUR][1000 genomes]
rs4279647	1.00[EUR][1000 genomes]
rs4434663	1.00[EUR][1000 genomes]
rs4477078	1.00[EUR][1000 genomes]
rs4551413	1.00[EUR][1000 genomes]
rs4615622	1.00[EUR][1000 genomes]
rs4961088	1.00[EUR][1000 genomes]
rs58905135	0.82[AFR][1000 genomes]
rs6469370	1.00[EUR][1000 genomes]
rs6469389	1.00[EUR][1000 genomes]
rs6469391	1.00[EUR][1000 genomes]
rs6993984	1.00[EUR][1000 genomes]
rs7010134	1.00[EUR][1000 genomes]
rs7845946	1.00[EUR][1000 genomes]
rs9656890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89300400-89310600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:89301800-89313000	Weak transcription	Fetal Brain Female	brain
3	chr8:89301800-89315000	Weak transcription	Fetal Stomach	stomach
4	chr8:89302000-89311200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:89302000-89326000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:89309200-89313000	Enhancers	HUVEC	blood vessel
7	chr8:89309400-89310400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:89309400-89310400	Enhancers	NHDF-Ad	bronchial
9	chr8:89309400-89310400	Enhancers	Osteobl	bone
10	chr8:89309400-89310800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:89309400-89311200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:89309400-89314600	Enhancers	NH-A	brain
13	chr8:89309600-89310600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr8:89309600-89311000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr8:89309600-89311200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:89309800-89310600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:89309800-89310600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:89309800-89310600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:89309800-89312000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:89310000-89310400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:89310000-89311000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr8:89310000-89311200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr8:89310000-89312200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:89310000-89314800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr8:89310200-89310600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:89310200-89310800	Weak transcription	Aorta	Aorta

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