Variant report

Variant	rs10113526
Chromosome Location	chr8:126001903-126001904
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125989560..125991489-chr8:125999508..126002227,2	K562	blood:
2	chr8:125991795..125994321-chr8:125997594..126002237,4	K562	blood:
3	chr8:125992331..125994870-chr8:126000151..126005042,4	K562	blood:
4	chr8:125574420..125577119-chr8:126000736..126002432,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170873	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10095831	0.89[EUR][1000 genomes]
rs10104558	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10105106	0.82[EUR][1000 genomes]
rs10105727	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10107103	0.89[EUR][1000 genomes]
rs10107456	0.89[EUR][1000 genomes]
rs10107535	0.89[EUR][1000 genomes]
rs10107774	0.82[EUR][1000 genomes]
rs10107857	0.83[AMR][1000 genomes]
rs10110658	0.89[EUR][1000 genomes]
rs10113187	0.89[EUR][1000 genomes]
rs10216983	0.82[EUR][1000 genomes]
rs10481077	0.94[EUR][1000 genomes]
rs10481078	0.94[EUR][1000 genomes]
rs12335277	0.82[EUR][1000 genomes]
rs28373620	0.89[EUR][1000 genomes]
rs28426979	0.89[EUR][1000 genomes]
rs28478462	0.89[EUR][1000 genomes]
rs28483573	0.89[EUR][1000 genomes]
rs28499344	0.89[EUR][1000 genomes]
rs28537766	0.89[EUR][1000 genomes]
rs28612361	0.89[EUR][1000 genomes]
rs28654092	0.89[EUR][1000 genomes]
rs28656968	0.89[EUR][1000 genomes]
rs28684823	0.89[EUR][1000 genomes]
rs28705718	0.89[EUR][1000 genomes]
rs28711324	0.89[EUR][1000 genomes]
rs28714194	0.89[EUR][1000 genomes]
rs28808359	0.89[EUR][1000 genomes]
rs28813511	0.89[EUR][1000 genomes]
rs28816450	0.89[EUR][1000 genomes]
rs28828449	0.94[EUR][1000 genomes]
rs28829886	0.89[EUR][1000 genomes]
rs28869565	0.89[EUR][1000 genomes]
rs6987181	0.89[EUR][1000 genomes]
rs6987278	0.89[EUR][1000 genomes]
rs6990024	0.89[EUR][1000 genomes]
rs7003311	0.89[EUR][1000 genomes]
rs7007356	0.89[EUR][1000 genomes]
rs73706181	0.82[EUR][1000 genomes]
rs73706182	0.89[EUR][1000 genomes]
rs73706183	0.89[EUR][1000 genomes]
rs73706184	0.94[EUR][1000 genomes]
rs73706186	0.89[EUR][1000 genomes]
rs73706188	0.89[EUR][1000 genomes]
rs73706190	0.94[EUR][1000 genomes]
rs73706192	0.89[EUR][1000 genomes]
rs73707910	0.89[EUR][1000 genomes]
rs73707911	0.89[EUR][1000 genomes]
rs73707912	0.89[EUR][1000 genomes]
rs73707913	0.89[EUR][1000 genomes]
rs73707915	0.89[EUR][1000 genomes]
rs73707916	0.89[EUR][1000 genomes]
rs73707917	0.89[EUR][1000 genomes]
rs73707918	0.89[EUR][1000 genomes]
rs73707923	0.89[EUR][1000 genomes]
rs73707924	0.89[EUR][1000 genomes]
rs7812303	0.89[EUR][1000 genomes]
rs7828622	0.89[EUR][1000 genomes]
rs7829785	0.89[EUR][1000 genomes]
rs7830483	0.89[EUR][1000 genomes]
rs7830592	0.89[EUR][1000 genomes]
rs9297705	0.94[EUR][1000 genomes]
rs9297706	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125986400-126006000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:125990600-126003000	Weak transcription	HepG2	liver
3	chr8:125994400-126009800	Weak transcription	Pancreas	Pancrea
4	chr8:125995200-126008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:125997400-126009800	Weak transcription	Fetal Lung	lung
6	chr8:125998000-126002600	ZNF genes & repeats	Liver	Liver
7	chr8:125998600-126009400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:125998800-126002800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
9	chr8:126000400-126009600	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:126000800-126007600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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