Variant report

Variant	rs9297705
Chromosome Location	chr8:125993810-125993811
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125992331..125994870-chr8:126000151..126005042,4	K562	blood:
2	chr8:125986784..125990540-chr8:125992857..125996075,4	K562	blood:
3	chr8:125991360..125996436-chr8:126005063..126011814,9	MCF-7	breast:
4	chr8:125987736..125990317-chr8:125991147..125995014,5	K562	blood:
5	chr8:125983916..125986929-chr8:125992858..125996868,3	K562	blood:
6	chr8:125971312..125972933-chr8:125992703..125994910,2	K562	blood:
7	chr8:125991795..125994321-chr8:125997594..126002237,4	K562	blood:
8	chr8:125991586..125993833-chr8:126007378..126010169,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000180938	Chromatin interaction
ENSG00000253513	Chromatin interaction
ENSG00000104549	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10095831	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10104558	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10105106	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10105727	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10107103	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10107456	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10107535	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10107774	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10110658	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10113187	0.94[EUR][1000 genomes]
rs10113526	0.94[EUR][1000 genomes]
rs10216983	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10481077	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481078	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334469	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12335277	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28373620	0.94[EUR][1000 genomes]
rs28426979	0.94[EUR][1000 genomes]
rs28478462	0.94[EUR][1000 genomes]
rs28483573	0.94[EUR][1000 genomes]
rs28499344	0.94[EUR][1000 genomes]
rs28537766	0.94[EUR][1000 genomes]
rs28612361	0.94[EUR][1000 genomes]
rs28654092	0.94[EUR][1000 genomes]
rs28656968	0.94[EUR][1000 genomes]
rs28684823	0.94[EUR][1000 genomes]
rs28705718	0.94[EUR][1000 genomes]
rs28711324	0.94[EUR][1000 genomes]
rs28714194	0.94[EUR][1000 genomes]
rs28808359	0.94[EUR][1000 genomes]
rs28813511	0.94[EUR][1000 genomes]
rs28816450	0.94[EUR][1000 genomes]
rs28828449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28829886	0.94[EUR][1000 genomes]
rs28869565	0.94[EUR][1000 genomes]
rs58355476	0.84[AFR][1000 genomes]
rs6987181	0.94[EUR][1000 genomes]
rs6987278	0.94[EUR][1000 genomes]
rs6990024	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7003311	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7007356	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7012867	0.90[AFR][1000 genomes]
rs7012918	1.00[AFR][1000 genomes]
rs73704504	1.00[AFR][1000 genomes]
rs73704506	0.90[AFR][1000 genomes]
rs73704507	0.90[AFR][1000 genomes]
rs73704509	0.80[AFR][1000 genomes]
rs73706181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73706182	0.94[EUR][1000 genomes]
rs73706183	0.94[EUR][1000 genomes]
rs73706184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73706186	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73706188	0.94[EUR][1000 genomes]
rs73706190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73706192	0.94[EUR][1000 genomes]
rs73707910	0.94[EUR][1000 genomes]
rs73707911	0.94[EUR][1000 genomes]
rs73707912	0.94[EUR][1000 genomes]
rs73707913	0.94[EUR][1000 genomes]
rs73707915	0.94[EUR][1000 genomes]
rs73707916	0.94[EUR][1000 genomes]
rs73707917	0.94[EUR][1000 genomes]
rs73707918	0.94[EUR][1000 genomes]
rs73707923	0.94[EUR][1000 genomes]
rs73707924	0.94[EUR][1000 genomes]
rs7812303	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7828622	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7829785	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7830483	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7830592	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9297706	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125986000-125995600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:125986200-125995800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:125986400-125997200	ZNF genes & repeats	Liver	Liver
4	chr8:125986400-126006000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:125986600-125995600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:125987800-125997400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr8:125988200-125995400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr8:125988600-125994600	ZNF genes & repeats	Fetal Muscle Leg	muscle
9	chr8:125990600-125996800	Weak transcription	Fetal Brain Male	brain
10	chr8:125990600-126003000	Weak transcription	HepG2	liver
11	chr8:125993200-125994800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
12	chr8:125993600-125994200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr8:125993600-125994400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:125993600-125994400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:125993600-125994400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:125993600-125994400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:125993600-125994400	ZNF genes & repeats	Aorta	Aorta
18	chr8:125993600-125994400	ZNF genes & repeats	Left Ventricle	heart
19	chr8:125993600-125994400	ZNF genes & repeats	Ovary	ovary
20	chr8:125993600-125994400	ZNF genes & repeats	Pancreas	Pancrea
21	chr8:125993600-125994600	ZNF genes & repeats	Primary B cells from cord blood	blood
22	chr8:125993600-125994600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr8:125993600-125994600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr8:125993600-125994600	ZNF genes & repeats	Brain Hippocampus Middle	brain
25	chr8:125993600-125994600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
26	chr8:125993600-125994800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
27	chr8:125993600-125994800	ZNF genes & repeats	Primary T cells from cord blood	blood
28	chr8:125993600-125994800	ZNF genes & repeats	Adipose Nuclei	Adipose
29	chr8:125993600-125995200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr8:125993600-125995200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
31	chr8:125993800-125994200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:125993800-125995400	ZNF genes & repeats	Brain Substantia Nigra	brain
33	chr8:125993800-125995400	ZNF genes & repeats	Psoas Muscle	Psoas
34	chr8:125993800-125995600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
35	chr8:125993800-125997000	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links