Variant report

Variant	rs58355476
Chromosome Location	chr8:125990640-125990641
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125989243..125991340-chr8:126007563..126010410,2	MCF-7	breast:
2	chr8:125989560..125991489-chr8:125999508..126002227,2	K562	blood:
3	chr8:125985948..125987656-chr8:125989770..125992616,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10481077	0.84[AFR][1000 genomes]
rs10481078	0.84[AFR][1000 genomes]
rs28828449	0.84[AFR][1000 genomes]
rs7012867	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012918	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704504	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704506	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704507	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73704509	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73706181	0.84[AFR][1000 genomes]
rs73706184	0.84[AFR][1000 genomes]
rs73706190	0.84[AFR][1000 genomes]
rs9297705	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125986000-125995600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:125986200-125991600	ZNF genes & repeats	Primary B cells from cord blood	blood
3	chr8:125986200-125995800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:125986400-125991000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:125986400-125997200	ZNF genes & repeats	Liver	Liver
6	chr8:125986400-126006000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:125986600-125995600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:125987200-125991000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr8:125987200-125991200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:125987200-125991400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr8:125987200-125992600	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr8:125987400-125991400	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
13	chr8:125987400-125991600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr8:125987600-125991600	ZNF genes & repeats	Brain Hippocampus Middle	brain
15	chr8:125987800-125997400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr8:125988200-125995400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:125988400-125991400	ZNF genes & repeats	Dnd41	blood
18	chr8:125988600-125990800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:125988600-125990800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr8:125988600-125991000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
21	chr8:125988600-125991200	ZNF genes & repeats	Fetal Lung	lung
22	chr8:125988600-125991400	ZNF genes & repeats	Brain Substantia Nigra	brain
23	chr8:125988600-125991600	ZNF genes & repeats	Brain Angular Gyrus	brain
24	chr8:125988600-125994600	ZNF genes & repeats	Fetal Muscle Leg	muscle
25	chr8:125988800-125991400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
26	chr8:125988800-125991600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr8:125989000-125991200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr8:125989000-125991600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:125989200-125991000	ZNF genes & repeats	Fetal Brain Female	brain
30	chr8:125990000-125992200	Weak transcription	Aorta	Aorta
31	chr8:125990400-125991600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
32	chr8:125990400-125992000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:125990600-125991600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr8:125990600-125993600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:125990600-125996800	Weak transcription	Fetal Brain Male	brain
36	chr8:125990600-126003000	Weak transcription	HepG2	liver

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