Variant report

Variant	rs73706190
Chromosome Location	chr8:125996542-125996543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125983916..125986929-chr8:125992858..125996868,3	K562	blood:

Variant related genes	Relation type
ENSG00000180938	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10095831	0.94[EUR][1000 genomes]
rs10104558	0.82[EUR][1000 genomes]
rs10105106	0.88[EUR][1000 genomes]
rs10105727	0.82[EUR][1000 genomes]
rs10107103	0.94[EUR][1000 genomes]
rs10107456	0.94[EUR][1000 genomes]
rs10107535	0.94[EUR][1000 genomes]
rs10107774	0.88[EUR][1000 genomes]
rs10110658	0.94[EUR][1000 genomes]
rs10113187	0.94[EUR][1000 genomes]
rs10113526	0.94[EUR][1000 genomes]
rs10216983	0.88[EUR][1000 genomes]
rs10481077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10481078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334469	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12335277	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28373620	0.94[EUR][1000 genomes]
rs28426979	0.94[EUR][1000 genomes]
rs28478462	0.94[EUR][1000 genomes]
rs28483573	0.94[EUR][1000 genomes]
rs28499344	0.94[EUR][1000 genomes]
rs28537766	0.94[EUR][1000 genomes]
rs28612361	0.94[EUR][1000 genomes]
rs28654092	0.94[EUR][1000 genomes]
rs28656968	0.94[EUR][1000 genomes]
rs28684823	0.94[EUR][1000 genomes]
rs28705718	0.94[EUR][1000 genomes]
rs28711324	0.94[EUR][1000 genomes]
rs28714194	0.94[EUR][1000 genomes]
rs28808359	0.94[EUR][1000 genomes]
rs28813511	0.94[EUR][1000 genomes]
rs28816450	0.94[EUR][1000 genomes]
rs28828449	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28829886	0.94[EUR][1000 genomes]
rs28869565	0.94[EUR][1000 genomes]
rs58355476	0.84[AFR][1000 genomes]
rs6987181	0.94[EUR][1000 genomes]
rs6987278	0.94[EUR][1000 genomes]
rs6990024	0.94[EUR][1000 genomes]
rs7003311	0.94[EUR][1000 genomes]
rs7007356	0.94[EUR][1000 genomes]
rs7012867	0.90[AFR][1000 genomes]
rs7012918	1.00[AFR][1000 genomes]
rs73704504	1.00[AFR][1000 genomes]
rs73704506	0.90[AFR][1000 genomes]
rs73704507	0.90[AFR][1000 genomes]
rs73704509	0.80[AFR][1000 genomes]
rs73706181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73706182	0.94[EUR][1000 genomes]
rs73706183	0.94[EUR][1000 genomes]
rs73706184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73706186	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73706188	0.94[EUR][1000 genomes]
rs73706192	0.94[EUR][1000 genomes]
rs73707910	0.94[EUR][1000 genomes]
rs73707911	0.94[EUR][1000 genomes]
rs73707912	0.94[EUR][1000 genomes]
rs73707913	0.94[EUR][1000 genomes]
rs73707915	0.94[EUR][1000 genomes]
rs73707916	0.94[EUR][1000 genomes]
rs73707917	0.94[EUR][1000 genomes]
rs73707918	0.94[EUR][1000 genomes]
rs73707923	0.94[EUR][1000 genomes]
rs73707924	0.94[EUR][1000 genomes]
rs7812303	0.94[EUR][1000 genomes]
rs7828622	0.94[EUR][1000 genomes]
rs7829785	0.94[EUR][1000 genomes]
rs7830483	0.94[EUR][1000 genomes]
rs7830592	0.94[EUR][1000 genomes]
rs9297705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9297706	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125986400-125997200	ZNF genes & repeats	Liver	Liver
2	chr8:125986400-126006000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:125987800-125997400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
4	chr8:125990600-125996800	Weak transcription	Fetal Brain Male	brain
5	chr8:125990600-126003000	Weak transcription	HepG2	liver
6	chr8:125993800-125997000	Weak transcription	Brain Angular Gyrus	brain
7	chr8:125994400-126009800	Weak transcription	Pancreas	Pancrea
8	chr8:125994600-125997600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:125995200-126008400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:125995800-125996800	Weak transcription	Aorta	Aorta
11	chr8:125996000-125996600	Weak transcription	Psoas Muscle	Psoas

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