Variant report

Variant	rs10113554
Chromosome Location	chr8:105327710-105327711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10102178	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10955346	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1447083	0.85[EUR][1000 genomes]
rs16871229	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1868010	0.82[AMR][1000 genomes]
rs2084280	0.82[AMR][1000 genomes]
rs2100103	0.85[EUR][1000 genomes]
rs2121550	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2340766	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2441844	0.87[ASN][1000 genomes]
rs2441851	0.82[CHD][hapmap]
rs4299971	0.83[CHB][hapmap]
rs4448239	0.89[ASW][hapmap];0.84[CHD][hapmap];0.80[JPT][hapmap];0.87[MEX][hapmap];0.84[AMR][1000 genomes]
rs4734096	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4734761	0.82[AMR][1000 genomes]
rs4734763	0.85[AFR][1000 genomes]
rs7818735	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7821516	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7846163	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10113554	OXR1	cis	cerebellum	SCAN
rs10113554	ZFPM2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105327200-105328200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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