Variant report

Variant	rs4734096
Chromosome Location	chr8:105301319-105301320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10102178	0.81[AMR][1000 genomes]
rs10113554	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10955346	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16871229	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1868010	0.83[AMR][1000 genomes]
rs2084280	0.83[AMR][1000 genomes]
rs2121550	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2441844	0.84[ASN][1000 genomes]
rs4448239	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4734761	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7818735	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7821516	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7846163	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3440633	chr8:105297684-105304611	Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3450089	chr8:105297923-105305073	ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105297400-105305800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr8:105299400-105305600	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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