Variant report
| Variant | rs16871229 |
|---|---|
| Chromosome Location | chr8:105308679-105308680 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10102063 | 0.88[ASN][1000 genomes] |
| rs10102178 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10113554 | 0.80[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs10955346 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1374518 | 0.82[ASN][1000 genomes] |
| rs1868010 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2084280 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2121550 | 0.80[AMR][1000 genomes] |
| rs2340766 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2441838 | 0.81[ASN][1000 genomes] |
| rs2441850 | 0.90[ASN][1000 genomes] |
| rs2441851 | 0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2511606 | 0.92[ASN][1000 genomes] |
| rs2511609 | 0.95[ASN][1000 genomes] |
| rs2514672 | 0.92[ASN][1000 genomes] |
| rs2514673 | 0.92[ASN][1000 genomes] |
| rs4448239 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4734094 | 0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4734096 | 0.91[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs4734761 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4734763 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7821516 | 0.87[AFR][1000 genomes] |
| rs7846163 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016087 | chr8:105228670-105934368 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:105306400-105312200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
