Variant report

Variant	rs10116475
Chromosome Location	chr9:18874290-18874291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10125547	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10125550	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10963804	0.81[AMR][1000 genomes]
rs10963805	0.81[AMR][1000 genomes]
rs10963810	0.81[AMR][1000 genomes]
rs10963818	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10963823	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10963824	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10963826	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10963827	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11515234	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12003911	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12349184	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2082581	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36068190	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7848851	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7859732	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7864878	0.89[EUR][1000 genomes]
rs934479	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18858800-18876600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:18863800-18881800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:18864400-18883000	Weak transcription	NH-A	brain
4	chr9:18869400-18887800	Weak transcription	Aorta	Aorta
5	chr9:18869600-18878200	Weak transcription	Fetal Stomach	stomach
6	chr9:18869600-18883000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:18870600-18887600	Weak transcription	NHDF-Ad	bronchial
8	chr9:18871200-18878600	Weak transcription	HSMM	muscle
9	chr9:18872200-18878400	Weak transcription	Osteobl	bone
10	chr9:18872800-18878600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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