Variant report

Variant	rs10963818
Chromosome Location	chr9:18888089-18888090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10116475	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10125547	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10125550	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10963823	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10963824	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10963826	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10963827	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11515234	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12003911	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12349184	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2082581	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36068190	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7848851	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7859732	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7864878	0.95[EUR][1000 genomes]
rs934479	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs934480	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
9	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18878600-18895600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr9:18879800-18889800	Weak transcription	HSMMtube	muscle
3	chr9:18883200-18888200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:18883800-18888400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:18885200-18889600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr9:18885800-18896400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:18886200-18889600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:18886400-18889800	Weak transcription	NHLF	lung
9	chr9:18887000-18890000	Strong transcription	NH-A	brain
10	chr9:18887200-18891000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:18887600-18888800	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:18887600-18888800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:18887600-18888800	Genic enhancers	Osteobl	bone
14	chr9:18887800-18888600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:18887800-18888800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr9:18887800-18889200	Strong transcription	Fetal Stomach	stomach
17	chr9:18887800-18889800	Strong transcription	Aorta	Aorta
18	chr9:18887800-18889800	Strong transcription	HSMM	muscle
19	chr9:18888000-18888400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:18888000-18888400	Strong transcription	Fetal Muscle Leg	muscle
21	chr9:18888000-18888600	Enhancers	Colon Smooth Muscle	Colon
22	chr9:18888000-18888800	Genic enhancers	NHDF-Ad	bronchial
23	chr9:18888000-18889000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:18888000-18891000	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:18888000-18892400	Weak transcription	Pancreas	Pancrea

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