Variant report

Variant	rs11515234
Chromosome Location	chr9:18898268-18898269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10116475	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10125547	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10125550	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10963818	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10963823	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10963824	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10963826	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10963827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12003911	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12349184	0.82[CEU][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2082581	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36068190	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7848851	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7859732	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7864878	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs934479	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491807	chr9:18243672-19009770	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv525659	chr9:18288212-19009041	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1019127	chr9:18288271-18996288	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1030931	chr9:18414752-18903530	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv892692	chr9:18519699-19045502	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv949111	chr9:18758205-18994588	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv892698	chr9:18830444-18905289	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1017820	chr9:18882219-19587377	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
9	nsv540078	chr9:18882219-19587377	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18889200-18901200	Weak transcription	Colonic Mucosa	Colon
2	chr9:18891200-18898800	Strong transcription	Muscle Satellite Cultured Cells	--
3	chr9:18893600-18899000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:18894800-18909200	Weak transcription	Fetal Heart	heart
5	chr9:18896000-18898400	Strong transcription	Osteobl	bone
6	chr9:18896800-18910600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:18897000-18898400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:18897000-18898800	Weak transcription	Gastric	stomach
9	chr9:18897000-18905000	Weak transcription	HSMMtube	muscle
10	chr9:18897000-18905200	Weak transcription	NHLF	lung
11	chr9:18897000-18910600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:18897200-18898800	Strong transcription	NH-A	brain
13	chr9:18897200-18905600	Weak transcription	Aorta	Aorta
14	chr9:18897400-18899000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:18897400-18920400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr9:18897600-18899000	Strong transcription	HSMM	muscle
17	chr9:18897600-18899400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:18897600-18906600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr9:18897800-18902200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:18897800-18902800	Weak transcription	NHDF-Ad	bronchial
21	chr9:18897800-18905000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr9:18898200-18905600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links