Variant report
| Variant | rs10116525 |
|---|---|
| Chromosome Location | chr9:94371909-94371910 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10122142 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10122152 | 0.81[ASN][1000 genomes] |
| rs10992025 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10992026 | 0.83[ASN][1000 genomes] |
| rs12003010 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12336799 | 0.83[ASN][1000 genomes] |
| rs12336839 | 0.83[ASN][1000 genomes] |
| rs12338549 | 0.93[EUR][1000 genomes] |
| rs12340405 | 0.91[ASN][1000 genomes] |
| rs12340758 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12340837 | 0.80[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12348938 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13440204 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1492682 | 0.91[ASN][1000 genomes] |
| rs28644770 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4744061 | 0.86[ASN][1000 genomes] |
| rs4744081 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4744090 | 0.83[ASN][1000 genomes] |
| rs58483310 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs60690708 | 0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67539705 | 0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7847068 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7859795 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045332 | chr9:94352661-94656016 | Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1047426 | chr9:94363211-94758114 | Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1051194 | chr9:94371037-94394234 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv275033 | chr9:94371706-94373806 | Enhancers Weak transcription | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:94368800-94374000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
