Variant report

Variant	rs10122152
Chromosome Location	chr9:94371592-94371593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10114204	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10116525	0.81[ASN][1000 genomes]
rs10116888	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12003010	0.81[ASN][1000 genomes]
rs12336409	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12341194	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12348938	0.81[ASN][1000 genomes]
rs4743841	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744070	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744081	0.81[ASN][1000 genomes]
rs60690708	0.81[ASN][1000 genomes]
rs6479365	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67539705	0.81[ASN][1000 genomes]
rs7847068	0.81[ASN][1000 genomes]
rs7850575	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7859795	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1051194	chr9:94371037-94394234	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94368800-94374000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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