Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:94363604..94366015-chr9:94372336..94374717,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228595	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10116525	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122142	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10122152	0.81[ASN][1000 genomes]
rs10992025	0.83[ASN][1000 genomes]
rs10992026	0.83[ASN][1000 genomes]
rs12336799	0.83[ASN][1000 genomes]
rs12336839	0.83[ASN][1000 genomes]
rs12338549	0.93[EUR][1000 genomes]
rs12340405	0.91[ASN][1000 genomes]
rs12340758	0.91[ASN][1000 genomes]
rs12340837	0.84[ASN][1000 genomes]
rs12348938	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13440204	0.83[ASN][1000 genomes]
rs1492682	0.91[ASN][1000 genomes]
rs28644770	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4744061	0.86[ASN][1000 genomes]
rs4744081	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744090	0.83[ASN][1000 genomes]
rs58483310	0.91[ASN][1000 genomes]
rs60690708	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67539705	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847068	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859795	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94352000-94365800	Weak transcription	Pancreas	Pancrea

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