Variant report

Variant	rs10116946
Chromosome Location	chr9:100739833-100739834
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1010777	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10125654	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10984606	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1131641	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1572025	0.97[ASN][1000 genomes]
rs1815275	0.80[ASN][1000 genomes]
rs4742710	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743152	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4743154	0.85[ASN][1000 genomes]
rs56145417	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7035650	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7044744	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7855077	0.97[ASN][1000 genomes]
rs7855088	0.97[ASN][1000 genomes]
rs7870926	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7874518	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs879275	0.89[ASN][1000 genomes]
rs987142	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100733200-100741400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:100734600-100741000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:100734800-100740800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:100734800-100741000	Weak transcription	Fetal Thymus	thymus
5	chr9:100734800-100741000	Weak transcription	Thymus	Thymus
6	chr9:100734800-100741400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:100735800-100744800	Weak transcription	Right Atrium	heart
8	chr9:100736000-100743400	Weak transcription	Dnd41	blood
9	chr9:100738200-100742600	Weak transcription	NHDF-Ad	bronchial
10	chr9:100739000-100741000	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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