Variant report

Variant	rs7855077
Chromosome Location	chr9:100742225-100742226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:100742200-100742350	HepG2	liver:	n/a	n/a
2	POLR2A	chr9:100742168-100742304	MCF10A-Er-Src	breast:	n/a	n/a
3	CTCF	chr9:100742200-100742350	GM12864	blood:	n/a	n/a
4	CTCF	chr9:100742180-100742330	GM06990	blood:	n/a	n/a
5	JUN	chr9:100741876-100746321	K562	blood:	n/a	chr9:100745695-100745704 chr9:100746200-100746209 chr9:100746025-100746034
6	CTCF	chr9:100742160-100742310	MCF-7	breast:	n/a	n/a
7	POLR2A	chr9:100742192-100742299	ProgFib	skin:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:
2	chr9:100693503..100695720-chr9:100740992..100742797,2	MCF-7	breast:
3	chr9:100682029..100688801-chr9:100740969..100749393,29	MCF-7	breast:
4	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
5	chr9:100682507..100691249-chr9:100739828..100748095,35	MCF-7	breast:

Variant related genes	Relation type
ANP32B	TF binding region
ENSG00000201830	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136929	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10116946	0.97[ASN][1000 genomes]
rs10121388	0.86[EUR][1000 genomes]
rs10125654	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10984606	0.97[ASN][1000 genomes]
rs1131641	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1572025	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815275	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4742710	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4743152	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4743154	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56108920	0.89[EUR][1000 genomes]
rs57298275	0.88[AMR][1000 genomes]
rs7037663	0.81[EUR][1000 genomes]
rs7044744	0.90[ASN][1000 genomes]
rs7855088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874518	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs879275	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs987142	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893612	chr9:100732802-100754703	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100735800-100744800	Weak transcription	Right Atrium	heart
2	chr9:100736000-100743400	Weak transcription	Dnd41	blood
3	chr9:100738200-100742600	Weak transcription	NHDF-Ad	bronchial
4	chr9:100740600-100745600	Enhancers	Fetal Brain Male	brain
5	chr9:100740800-100742400	Enhancers	Brain Hippocampus Middle	brain
6	chr9:100740800-100742800	Enhancers	Brain Angular Gyrus	brain
7	chr9:100740800-100742800	Enhancers	Brain Cingulate Gyrus	brain
8	chr9:100740800-100742800	Enhancers	Brain Substantia Nigra	brain
9	chr9:100740800-100744200	Enhancers	Fetal Brain Female	brain
10	chr9:100740800-100744600	Enhancers	Primary T cells from cord blood	blood
11	chr9:100740800-100744600	Weak transcription	Spleen	Spleen
12	chr9:100741000-100742400	Enhancers	K562	blood
13	chr9:100741000-100742600	Enhancers	Colon Smooth Muscle	Colon
14	chr9:100741000-100743200	Enhancers	Brain Anterior Caudate	brain
15	chr9:100741000-100743400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:100741000-100743400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr9:100741000-100743800	Enhancers	Fetal Thymus	thymus
18	chr9:100741000-100744400	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr9:100741200-100744600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr9:100741400-100742400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr9:100741400-100744600	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr9:100741400-100744600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr9:100741400-100744600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr9:100741400-100744800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr9:100741600-100742800	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr9:100741600-100743800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:100741600-100744200	Enhancers	Thymus	Thymus
28	chr9:100741800-100744600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr9:100742000-100742600	Enhancers	Primary hematopoietic stem cells	blood
30	chr9:100742000-100742800	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr9:100742200-100742600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr9:100742200-100742600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr9:100742200-100743000	Enhancers	Brain Germinal Matrix	brain
34	chr9:100742200-100743000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr9:100742200-100744600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr9:100742200-100744600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr9:100742200-100744600	Enhancers	Fetal Muscle Leg	muscle

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