Variant report

Variant	rs1815275
Chromosome Location	chr9:100788312-100788313
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100784033..100788653-chr9:100792674..100797277,7	K562	blood:
2	chr9:100769812..100771539-chr9:100787436..100790076,2	MCF-7	breast:
3	chr9:100786498..100789736-chr9:100818544..100820292,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000212521	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10116946	0.80[ASN][1000 genomes]
rs10121388	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10125654	0.89[ASN][1000 genomes]
rs10984606	0.80[ASN][1000 genomes]
rs1131641	0.91[ASN][1000 genomes]
rs1572025	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4742710	0.91[ASN][1000 genomes]
rs4743152	0.91[ASN][1000 genomes]
rs4743154	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56108920	0.85[EUR][1000 genomes]
rs7037663	0.86[AMR][1000 genomes]
rs7044744	0.91[ASN][1000 genomes]
rs7855077	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7855088	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7874518	0.83[ASN][1000 genomes]
rs879275	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs987142	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv3493282	chr9:100784615-100805700	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3493283	chr9:100784615-100805700	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100770600-100788400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:100778800-100788400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:100780000-100788800	Weak transcription	Fetal Kidney	kidney
4	chr9:100781800-100788800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:100781800-100791800	Weak transcription	Hela-S3	cervix
6	chr9:100781800-100796800	Weak transcription	Brain Anterior Caudate	brain
7	chr9:100781800-100796800	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:100782000-100796800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr9:100782200-100788600	Weak transcription	K562	blood
10	chr9:100782200-100792400	Weak transcription	Aorta	Aorta
11	chr9:100782200-100794200	Weak transcription	NHDF-Ad	bronchial
12	chr9:100782200-100796800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr9:100782200-100796800	Weak transcription	HepG2	liver
14	chr9:100782400-100796800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:100782400-100797000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:100783000-100791200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:100783600-100788400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:100783600-100789200	Weak transcription	Brain Germinal Matrix	brain
19	chr9:100783600-100789400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:100783600-100796800	Weak transcription	Liver	Liver
21	chr9:100783600-100796800	Weak transcription	A549	lung
22	chr9:100783600-100797000	Weak transcription	Brain Substantia Nigra	brain
23	chr9:100783800-100797000	Weak transcription	NHEK	skin
24	chr9:100784000-100788800	Weak transcription	Pancreas	Pancrea
25	chr9:100784000-100789000	Weak transcription	Esophagus	oesophagus
26	chr9:100784000-100803800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr9:100784200-100788400	Weak transcription	Ovary	ovary
28	chr9:100784200-100790600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:100784200-100792200	Weak transcription	Primary hematopoietic stem cells	blood
30	chr9:100784200-100794800	Weak transcription	GM12878-XiMat	blood
31	chr9:100784200-100796800	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr9:100784200-100796800	Weak transcription	Gastric	stomach
33	chr9:100784200-100796800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr9:100784200-100796800	Weak transcription	Dnd41	blood
35	chr9:100784200-100796800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr9:100784200-100797000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr9:100784400-100788600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:100784400-100791800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr9:100784400-100794200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr9:100784400-100794200	Weak transcription	HSMM	muscle
41	chr9:100784400-100796000	Weak transcription	Fetal Thymus	thymus
42	chr9:100784400-100796800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:100784400-100796800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr9:100784400-100796800	Weak transcription	Fetal Muscle Trunk	muscle
45	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:100784400-100797000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr9:100784400-100797400	Weak transcription	HSMMtube	muscle
48	chr9:100784600-100790400	Weak transcription	Brain Hippocampus Middle	brain
49	chr9:100784600-100792000	Weak transcription	Fetal Stomach	stomach
50	chr9:100784600-100795600	Weak transcription	Stomach Smooth Muscle	stomach

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