Variant report

Variant	rs10118
Chromosome Location	chr11:9800601-9800602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10770062	0.82[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs1392026	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs183110	0.91[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1875030	0.95[ASN][1000 genomes]
rs2173030	0.84[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs2645017	0.90[ASN][1000 genomes]
rs2645029	0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs360120	0.84[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs360124	0.84[CHB][hapmap];0.89[JPT][hapmap];0.94[ASN][1000 genomes]
rs360127	0.98[ASN][1000 genomes]
rs360129	0.84[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap];0.92[ASN][1000 genomes]
rs360130	0.91[ASN][1000 genomes]
rs360131	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs360132	0.93[ASN][1000 genomes]
rs360140	0.84[JPT][hapmap]
rs360141	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs360142	0.84[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs360143	0.84[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs360146	0.95[ASN][1000 genomes]
rs360150	0.84[CHB][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs360151	0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs380806	0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs391304	0.86[ASN][1000 genomes]
rs394315	0.98[ASN][1000 genomes]
rs432849	0.84[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.98[ASN][1000 genomes]
rs438151	0.84[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs472487	0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs634680	0.84[CHB][hapmap];0.92[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs6483726	0.83[CHD][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9780600-9813200	Weak transcription	Small Intestine	intestine
2	chr11:9781400-9800800	Weak transcription	Fetal Brain Female	brain
3	chr11:9781600-9801000	Weak transcription	Primary T cells from cord blood	blood
4	chr11:9781600-9809000	Weak transcription	Fetal Brain Male	brain
5	chr11:9781800-9801200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr11:9781800-9801600	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:9784000-9801200	Weak transcription	Gastric	stomach
8	chr11:9787400-9801000	Weak transcription	Aorta	Aorta
9	chr11:9787800-9801000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr11:9787800-9805200	Weak transcription	Colonic Mucosa	Colon
11	chr11:9788000-9801000	Weak transcription	Lung	lung
12	chr11:9788200-9801000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:9788600-9801600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:9789200-9801000	Weak transcription	Spleen	Spleen
15	chr11:9791000-9801000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:9792000-9801200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:9792200-9801000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:9793800-9801000	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr11:9794200-9801000	Weak transcription	Fetal Intestine Small	intestine
20	chr11:9795200-9812800	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:9796600-9801400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:9796800-9800800	Weak transcription	HepG2	liver
23	chr11:9796800-9801200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:9796800-9803600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:9797000-9801000	Weak transcription	Psoas Muscle	Psoas
26	chr11:9797000-9801200	Weak transcription	HUVEC	blood vessel
27	chr11:9797000-9801400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr11:9797200-9800800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:9797200-9800800	Weak transcription	HMEC	breast
30	chr11:9797200-9801000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:9797200-9801000	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:9797200-9801000	Weak transcription	Colon Smooth Muscle	Colon
33	chr11:9797200-9801200	Weak transcription	Pancreas	Pancrea
34	chr11:9797200-9801400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:9797200-9801800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:9797200-9802000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:9797400-9801000	Weak transcription	Brain Anterior Caudate	brain
38	chr11:9797400-9801000	Weak transcription	Brain Substantia Nigra	brain
39	chr11:9797400-9801000	Weak transcription	Esophagus	oesophagus
40	chr11:9797400-9801000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:9797400-9801000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:9797400-9801200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:9797400-9821800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:9797600-9800800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr11:9797600-9801000	Weak transcription	Right Ventricle	heart
46	chr11:9797600-9801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:9797600-9801600	Weak transcription	Fetal Thymus	thymus
48	chr11:9797600-9803600	Strong transcription	Fetal Intestine Large	intestine
49	chr11:9797800-9800800	Weak transcription	Dnd41	blood
50	chr11:9797800-9811800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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